PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00021182001

Common Name

GSBRNA2T00021182001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 339aa MW: 38585.7 Da PI: 6.6619

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00021182001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.8e-05	170	189	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ GSBRNA2T00021182001 170 FSCPLCFKTFNRYNNMQMHM 189 89*****************9 PP
2	zf-C2H2	13.1	0.00029	254	276	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ GSBRNA2T00021182001 254 FACRRCGKAFAVKGDWRTHEKNC 276 78*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.8E-5	170	189	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.66	170	197	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	172	192	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.99E-6	240	274	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-5	240	274	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.767	254	274	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MSNPAYSNLF NNGFDNTNFN CSTSLSYIYN SHNSFYYPNT TNPNYMAPTT STFPNSPPLR 60 EALPLLSLSP IRHQEQQDQH YFMDTDQISS SKFLDYPHDV TVDLHLGLPN YGIGGSYIAP 120 VATTDEQDDD QGVEVTVDSH LHDDDDGDLH RDHHYWIPTP DQILMGPTQF SCPLCFKTFN 180 RYNNMQMHMW GHGSQYRKGP ESLRGTQPTG MLRLPCYCCA PGCKNNIDHP RTKPLKDFRT 240 LQTHYKRKHG SRPFACRRCG KAFAVKGDWR THEKNCGKLW YCSCGSDFKH KRSLKDHVKA 300 FGNGHIPCGI DNFGGDHEDY YEAASDIQQQ DDCNTNEC*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00021182001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ311810	0.0	AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013589024.1	0.0	PREDICTED: zinc finger protein WIP5
Refseq	XP_013739635.1	0.0	zinc finger protein WIP5
Swissprot	Q8W031	0.0	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	A0A078GBV9	0.0	A0A078GBV9_BRANA; BnaA06g02430D protein
STRING	Bo6g025920.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	0.0	WIP domain protein 5

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]