PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00021389001
Common NameGSBRNA2T00021389001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 361aa    MW: 39840.8 Da    PI: 7.8589
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00021389001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-076893127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ykt+ C  f   G C+ G+ C+FaHg+
  GSBRNA2T00021389001 68 YKTRMCVKFKS-GACRNGELCNFAHGM 93
                         89999**9999.*************95 PP
2zf-CCCH18.73.1e-061541681125
                          GTS.--TTTTT-SS-S CS
              zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                            G +C+yGdrC+F+H
  GSBRNA2T00021389001 154 F-GeECPYGDRCNFIH 168
                          5.449*********** PP
3zf-CCCH37.83.1e-12243268127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt+lC  f + G+C++Gd+C+FaHg+
  GSBRNA2T00021389001 243 WKTRLCGKFEK-GQCPFGDNCHFAHGQ 268
                          8**********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-1465100IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-86698IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-46793IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4366794IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-46893IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036143170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-6143169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.455143171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-8145169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-14240271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8240271IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-7242268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.713242269IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-10243268IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDSSYSDSRP YGVWKQTQMV DSMNNDQSDS QTMPQLKRPR LVDDNNTSWN FPSSNAPPVN  60
KGTANIFYKT RMCVKFKSGA CRNGELCNFA HGMEDLRQPP SNWQEIVGPP VQDREKERER  120
ERLSSVGNNS NNGGNWEDDQ KIILRMKLCR KFCFGEECPY GDRCNFIHED LSKFREENGK  180
LRESLAISVV DPLSVENGVV ASHQVEVNRQ GGVPAPVPAP VPAPVPAPAP LNNGGGGVKT  240
VFWKTRLCGK FEKGQCPFGD NCHFAHGQAE LLQHSVGRVE GEAMNAVAAS VSKPMVVPAN  300
EAFAMKPTAQ VTADSSGLND EGRRKKCLLK WSDSKKINRI YGDWIDDLPV GQKSTKPVES  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00021389001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535211e-110AK353521.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-48-H16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022555303.10.0zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT811e-171C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A078GC830.0A0A078GC83_BRANA; BnaC03g40930D protein
STRINGBo3g073180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-166C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]