PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00021490001
Common NameGSBRNA2T00021490001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 227aa    MW: 24660.2 Da    PI: 5.7
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00021490001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-102068346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                         +WT+eE+e l  +v ++G g W++I +          R+  ++k++w++
  GSBRNA2T00021490001 20 KWTPEEEEALMAGVLEHGIGKWRSILANPEyssvlHSRSNVDLKDKWRN 68
                         8**********************************9***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-141369IPR009057Homeodomain-like
PROSITE profilePS5129410.4081374IPR017930Myb domain
SuperFamilySSF466892.08E-151571IPR009057Homeodomain-like
SMARTSM007173.6E-51772IPR001005SANT/Myb domain
CDDcd116606.24E-191969No hitNo description
PfamPF002491.9E-71968IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVSSLDREKE VVNMGAPKHK WTPEEEEALM AGVLEHGIGK WRSILANPEY SSVLHSRSNV  60
DLKDKWRNIS VAATCGSRKK AKQGDDGGQQ IIPASAPLAL SYEPPQDLFT SVDNMILEAI  120
TNFTGPLGPD RNSILLYAEV KANMPMYMEP LVTSRLEHLI NIETVVKIEH MYSVSQGYAA  180
AKAIAEAELA LAEAEVAARE ADNAEAKAEA ARIFAKVAMK ALKATR*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00021490001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013696319.21e-166telomere repeat-binding factor 3-like
SwissprotQ9M2X34e-59TRB3_ARATH; Telomere repeat-binding factor 3
TrEMBLA0A078GDE31e-164A0A078GDE3_BRANA; BnaC07g31550D protein
TrEMBLA0A0D3DDQ81e-164A0A0D3DDQ8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F1T51e-164A0A3P6F1T5_BRAOL; Uncharacterized protein
STRINGBo7g099090.11e-165(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2026256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.16e-60telomere repeat binding factor 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  3. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]