PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00021518001
Common NameGSBRNA2T00021518001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 257aa    MW: 28588.7 Da    PI: 5.2678
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00021518001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-18101151255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp   + k  r++lg+++ a eAa+a+++a+ +l+g
  GSBRNA2T00021518001 101 HYRGVRRRP-WGKYAAEIRDP---NkKGSRIWLGTYDRAVEAARAYDQAAFQLRG 151
                          7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-31100159IPR001471AP2/ERF domain
PfamPF008471.5E-12101151IPR001471AP2/ERF domain
PROSITE profilePS5103224.131101159IPR001471AP2/ERF domain
SMARTSM003806.7E-36101165IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23101161IPR016177DNA-binding domain
CDDcd000184.74E-29101159No hitNo description
PRINTSPR003673.3E-13102113IPR001471AP2/ERF domain
PRINTSPR003673.3E-13141161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MATKQESLAI EFISQHLLTD FAFTETEPSS FTLHETGPSL FTSQVHDYQL ETSSTTINNQ  60
NHKPNSTLNR RKPPLPNLSV SRTVSGTVKK TEEEEGEEER HYRGVRRRPW GKYAAEIRDP  120
NKKGSRIWLG TYDRAVEAAR AYDQAAFQLR GRKAILNFPL DVRATSESFL EEGVNGKRKR  180
VKSSPAVEED EKAVAVRVKV EEEESDTTET TEAEVEAVPL TPSSWMGFWD VGAGDGIFSV  240
PPLSPTSPNF SVISVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2696159972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.182280.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00021518001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593822.10.0PREDICTED: ethylene-responsive transcription factor ERF104
RefseqXP_013693230.10.0ethylene-responsive transcription factor ERF104-like
SwissprotQ9FKG11e-117EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBLA0A078GDF80.0A0A078GDF8_BRANA; BnaC07g31350D protein
STRINGBo7g098860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134641828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.14e-99ethylene response factor 104
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]