PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00021519001
Common NameGSBRNA2T00021519001, LOC106400746
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 199aa    MW: 22368.9 Da    PI: 5.8094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00021519001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-16105155255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a+++ + kl+g
  GSBRNA2T00021519001 105 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESDIDAARAYDHEAFKLRG 155
                          7********.**********954..34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-30104164IPR001471AP2/ERF domain
PROSITE profilePS5103223.788105163IPR001471AP2/ERF domain
SMARTSM003802.6E-34105169IPR001471AP2/ERF domain
PfamPF008475.9E-10105155IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22105164IPR016177DNA-binding domain
CDDcd000181.19E-27105163No hitNo description
PRINTSPR003672.9E-12106117IPR001471AP2/ERF domain
PRINTSPR003672.9E-12145165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MATIEKSSDL EKHLFEDLMI PDGFMEDFVF DDAAFFSGLW SLEPLNQVPK LEPSSPVLDP  60
DSYVQEFLQT EAESSSSTTT TTTTSPEVET VSNRKRSKRA EETRHYRGVR RRPWGKFAAE  120
IRDPAKKGSR IWLGTFESDI DAARAYDHEA FKLRGRKAVL NFPLDAGKYD APVNSCRKRR  180
RCDVPEPQGI ATSNSSSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-28102164264ATERF1
3gcc_A4e-28102164264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176180RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.142080.0flower| seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00021519001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9918480.0GU991848.1 Brassica napus AP2/ERF transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597619.11e-146PREDICTED: ethylene-responsive transcription factor ERF107
SwissprotQ9FKG21e-105EF107_ARATH; Ethylene-responsive transcription factor ERF107
TrEMBLA0A078GEM01e-144A0A078GEM0_BRANA; BnaC07g31340D protein
TrEMBLA0A0D3DDN41e-144A0A0D3DDN4_BRAOL; Uncharacterized protein
STRINGBo7g098850.11e-145(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61590.16e-97ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Suh MC,Go YS
    DEWAX-mediated transcriptional repression of cuticular wax biosynthesis in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(8): p. e29463
    [PMID:25763625]
  5. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]
  6. Walper E,Weiste C,Mueller MJ,Hamberg M,Dröge-Laser W
    Screen Identifying Arabidopsis Transcription Factors Involved in the Response to 9-Lipoxygenase-Derived Oxylipins.
    PLoS ONE, 2016. 11(4): p. e0153216
    [PMID:27073862]
  7. Ju S,Go YS,Choi HJ,Park JM,Suh MC
    DEWAX Transcription Factor Is Involved in Resistance to Botrytis cinerea in Arabidopsis thaliana and Camelina sativa.
    Front Plant Sci, 2017. 8: p. 1210
    [PMID:28744297]
  8. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]