PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00021842001
Common NameGSBRNA2T00021842001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 243aa    MW: 26934.8 Da    PI: 8.4669
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00021842001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.7e-1889139256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          +y+GVr ++ +g+Wv+eIr+p+    + +r++lg+++ +e+Aa+a++ a  +++ge
  GSBRNA2T00021842001  89 CYRGVRKRS-WGKWVSEIRVPR----TgRRIWLGSYDAPEKAARAYDSALFCIKGE 139
                          8*****888.**********95....25***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.4E-1989147IPR016177DNA-binding domain
PROSITE profilePS5103221.65489146IPR001471AP2/ERF domain
PfamPF008474.7E-1189139IPR001471AP2/ERF domain
SMARTSM003808.9E-3489152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2789147IPR001471AP2/ERF domain
PRINTSPR003673.2E-990101IPR001471AP2/ERF domain
CDDcd000181.41E-3090148No hitNo description
PRINTSPR003673.2E-9112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MMLDCSEQCM SIINGPFVVH LVSVSMLFGS IPQDRRKLPL ECLNLGKKRS LDFVTTRRRS  60
ASVVVLMPPS TPKSHLLSSS LEEDQKFKCY RGVRKRSWGK WVSEIRVPRT GRRIWLGSYD  120
APEKAARAYD SALFCIKGEK GAFNFPNDKK PQLPEGSVRP LSKHDIQTIA TDYALSVASA  180
PSSPTTTVPA TYQVPSHVPA SSDASSANEH YLPVDATAES IYSVEDLQLD NFLIMDWINN  240
LD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1586146263ATERF1
3gcc_A1e-1586146263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00021842001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893750.0AC189375.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048L11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108952.11e-129PREDICTED: ethylene-responsive transcription factor ERF015-like
RefseqXP_013720370.11e-129ethylene-responsive transcription factor ERF015-like
SwissprotQ6NLD52e-95ERF15_ARATH; Ethylene-responsive transcription factor ERF015
TrEMBLA0A078GA171e-180A0A078GA17_BRANA; BnaA08g12710D protein
TrEMBLM4D1A91e-172M4D1A9_BRARP; Uncharacterized protein
STRINGBra010258.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148991620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.11e-89ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]