PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00021953001

Common Name

GSBRNA2T00021953001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 241aa MW: 28241.5 Da PI: 10.2988

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00021953001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.9	1.3e-26	81	169	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++Y++++GF +r+ + ++s+r+g++ r+f C+keg+ + + k+ + r++r++tr gCka+++vk +++gkw+vtk+++eHnH+l+ GSBRNA2T00021953001 81 FYDDYSRSLGFVMRVMSCRRSERDGRVLARRFGCNKEGRCVSVRGKSGSVRKPRQSTREGCKAMVHVKYDRSGKWVVTKFVKEHNHPLV 169 9************************************99999999**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-24	81	169	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MYLKNTTTFF MNTMSGLPQL IYFLLFKTSP SQFLKYQFRS PLSLSLSRRR SFQIVKSMED 60 DSTIVPREGT EFESEEAAKM FYDDYSRSLG FVMRVMSCRR SERDGRVLAR RFGCNKEGRC 120 VSVRGKSGSV RKPRQSTREG CKAMVHVKYD RSGKWVVTKF VKEHNHPLVV EPRQARQTLD 180 EKDKRIQELT IELRNKKRLC AAYKEQLDAF AKIVEEYSNR MSKRVESVVE NLKEFEHIEQ 240 *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.11624	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00021953001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013634182.1	1e-133	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2
Refseq	XP_013690534.1	1e-133	protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	A0A078GDA5	1e-177	A0A078GDA5_BRANA; BnaC04g48820D protein
STRING	Bo4g194230.1	1e-133	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-117	FAR1 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]