PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00022030001
Common NameGSBRNA2T00022030001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 257aa    MW: 28935.2 Da    PI: 8.3688
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00022030001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3469.4e-1519113199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffk+l  +d +++++  +p++f ++ + k + + ++tl+  +  sW+v+l  +   g   + +kGW++F ++n+L +++f++F+ +g+++
  GSBRNA2T00022030001  19 FFKILADEDLSSESMRLIPNEFWRRSECK-NLPPKVTLKVAWESSWTVNL--SPFMGCyLMERKGWEKFLNDNHLGDNEFLTFTNEGNNC 105
                          99*********************999544.56779***************..66665525666*********************666666 PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                             +v +f+k
  GSBRNA2T00022030001 106 I--TVDIFQK 113
                          5..8888876 PP
2B350.34.3e-161742511396
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          +  l++p +fa+eh+ +    ++ ++ d++g+ Wev +    + g+ ++++GW+  ++  gL +gD ++F+l++   +e+v+ v
  GSBRNA2T00022030001 174 LTVLSIPVTFAKEHMPN--ARTKFVIHDPKGKPWEVVY--VPSNGSKLFSSGWRFLANGYGLAVGDLCTFRLVR--PREMVLEV 251
                          4569**********855..4568***************..9999999************************987..44455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-1615115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-1517118IPR015300DNA-binding pseudobarrel domain
CDDcd100173.72E-1318111No hitNo description
PfamPF023624.6E-1319113IPR003340B3 DNA binding domain
PROSITE profilePS5086311.7319114IPR003340B3 DNA binding domain
SMARTSM010193.0E-1219114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-19161253IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-20161253IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.858162255IPR003340B3 DNA binding domain
SMARTSM010191.6E-14165255IPR003340B3 DNA binding domain
PfamPF023624.3E-13172249IPR003340B3 DNA binding domain
CDDcd100178.35E-13177252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MARNIAFGRI QEDMNKTSFF KILADEDLSS ESMRLIPNEF WRRSECKNLP PKVTLKVAWE  60
SSWTVNLSPF MGCYLMERKG WEKFLNDNHL GDNEFLTFTN EGNNCITVDI FQKNCIEILK  120
PLNTSSSNVK NEEMSCVDPV IAESKKKVDS NVYGASSSSF SAATFSLTIK KSHLTVLSIP  180
VTFAKEHMPN ARTKFVIHDP KGKPWEVVYV PSNGSKLFSS GWRFLANGYG LAVGDLCTFR  240
LVRPREMVLE VLHASS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.186140.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00022030001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013687974.11e-180B3 domain-containing protein At5g18090-like
RefseqXP_022574264.11e-180B3 domain-containing protein At5g18090-like
TrEMBLA0A078GDF10.0A0A078GDF1_BRANA; BnaC04g49490D protein
TrEMBLA0A3P6CP330.0A0A3P6CP33_BRAOL; Uncharacterized protein
STRINGBra037663.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.17e-48B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]