PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00022341001
Common NameGSBRNA2T00022341001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19868.8 Da    PI: 8.9282
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00022341001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.19.4e-181052244
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                         +i n+  r+ tf kR++g+lKKA+ELS+LC+++v+ +i s ++
  GSBRNA2T00022341001 10 PITNSAARNQTFRKRKKGLLKKANELSTLCGVKVCAVINSCDN 52
                         799***********************************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-19161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.745149IPR002100Transcription factor, MADS-box
CDDcd002662.21E-15384No hitNo description
SuperFamilySSF554552.22E-22396IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-181152IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MPKGRIKIEP ITNSAARNQT FRKRKKGLLK KANELSTLCG VKVCAVINSC DNTEPPEFWP  60
SKEGAEAVHS AFMGVLPEER CKRMYDQERH LEERIHKGQD RAMRLHTDNR EIELREVMFD  120
LLRGKTLMPH QYGDPSFMRD LNLFIGDYAN KVTYRTQFLE GNVEHVPPNV AV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00022341001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013617893.11e-102PREDICTED: MADS-box transcription factor PHERES 1-like
TrEMBLA0A078K2931e-127A0A078K293_BRANA; BnaCnng74980D protein (Fragment)
STRINGBo2g155830.11e-101(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14795620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.18e-40M-type_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]