PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00022655001
Common NameGSBRNA2T00022655001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 220aa    MW: 24626.9 Da    PI: 7.4416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00022655001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-1167113453
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                          ++  rE++RRd++N++f eL ++l +    +++K +K++i   A++ +++
  GSBRNA2T00022655001  67 SKACREKQRRDKLNDKFTELSSILEPG---RAPKTDKVAIINDAIRMVNQ 113
                          5678**********************9...9**************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.70963114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-1265133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.14E-866119No hitNo description
Gene3DG3DSA:4.10.280.102.5E-1267136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-967113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-769120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
TNWLSDYPLL IDGVFSHHSP TFPWQIDGSA TTVSVEEVDG FLCDSDVIKE PGSKKRVKSE  60
SNAGPSSKAC REKQRRDKLN DKFTELSSIL EPGRAPKTDK VAIINDAIRM VNQARDEAQR  120
LKDLNSNLQE KIKELKDEKN ELRDEKQKLK TEKDRIEQQL KAINTQPCFL PNPPTLSQAQ  180
APGSKLVPFT TYPGFAMWQF MPPAAVDTSQ DHVLRPPVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.176990.0bud| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00022655001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534061e-173AK353406.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-I24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144925.11e-161PREDICTED: transcription factor bHLH115
SwissprotQ9C6821e-136BH115_ARATH; Transcription factor bHLH115
TrEMBLA0A078K1Y51e-161A0A078K1Y5_BRANA; BnaA05g35780D protein (Fragment)
STRINGBra030459.1-P1e-161(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14372890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.11e-138bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]