PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00022789001
Common NameGSBRNA2T00022789001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 477aa    MW: 53885.5 Da    PI: 6.4477
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00022789001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.2e-1423901797
                         E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         ++  +f+++h       k l + d+s + W+vkl  ++++   + ++GW+eF+ka+  ++gD++vF++dg++ f  +v v 
  GSBRNA2T00022789001 23 TVDDEFLKKHT------KVLLISDSSEKIWKVKL--DGSR---LAGGGWEEFAKAHSFRDGDVLVFRHDGDEIF--HVAVS 90
                         34445555554......3477888999*******..8888...889***********************99999..55544 PP
2B363.53.2e-20147243198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+ + +++++l ++rl l+k+f+    ++++++ ++ l +e+gr+W++ l+ + +sg +++++GW +F++ang+ +gD++ Fkl++ +++
  GSBRNA2T00022789001 147 FLRARVTPYSLIKDRLDLSKDFTVVSFNEHNKPCEIDLVNEKGRKWTLCLSKNSTSGVFYIRRGWVNFCSANGISQGDICKFKLSE-NGE 235
                          667788999*************7666444556669***************77777777*************************987.677 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                          ++v++++ 
  GSBRNA2T00022789001 236 RPVLRLCP 243
                          79999986 PP
3B364.81.3e-20269366199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr. 87 
                          f++v ++++ l++g+l+++  f++e g+kk  s ++tl++++gr+W  +l+++++ g+  ++l+ GW+e++k ng+k++D++v++l+++ 
  GSBRNA2T00022789001 269 FLTVKLTPSRLQTGQLYISSVFVNESGIKK--SGEITLMNQDGRKWPSYLQMTGQCGSewFYLRHGWREMCKTNGVKVNDSFVLELVWEd 356
                          77888999***************9999885..458***************9966655556***************************975 PP

                          SEE..EEEEE-S CS
                   B3  88 sefelvvkvfrk 99 
                          +++  v+k+++k
  GSBRNA2T00022789001 357 DDA--VLKFCSK 366
                          666..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.929193IPR003340B3 DNA binding domain
CDDcd100171.63E-10189No hitNo description
SMARTSM010196.0E-121093IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-122790IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-122889IPR015300DNA-binding pseudobarrel domain
PfamPF023625.8E-92989IPR003340B3 DNA binding domain
SMARTSM010194.2E-23147245IPR003340B3 DNA binding domain
PROSITE profilePS5086314.565147244IPR003340B3 DNA binding domain
PfamPF023624.4E-18147243IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-18149245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-17151244IPR015300DNA-binding pseudobarrel domain
CDDcd100176.26E-18157243No hitNo description
Gene3DG3DSA:2.40.330.101.9E-19264366IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-19268367IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.6E-26269367IPR003340B3 DNA binding domain
PfamPF023621.2E-21269366IPR003340B3 DNA binding domain
CDDcd100175.54E-14269356No hitNo description
PROSITE profilePS5086312.929269369IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MTIPPKFSLF HHRVITGDKP VLTVDDEFLK KHTKVLLISD SSEKIWKVKL DGSRLAGGGW  60
EEFAKAHSFR DGDVLVFRHD GDEIFHVAVS PRSDSWDIRH HTSPSLVDTD DAVSDDESDD  120
EEEESDDDAG DISVNKKKNK EAGFSCFLRA RVTPYSLIKD RLDLSKDFTV VSFNEHNKPC  180
EIDLVNEKGR KWTLCLSKNS TSGVFYIRRG WVNFCSANGI SQGDICKFKL SENGERPVLR  240
LCPSSNSHEE EEECPEVDAG KKQNTPSQFL TVKLTPSRLQ TGQLYISSVF VNESGIKKSG  300
EITLMNQDGR KWPSYLQMTG QCGSEWFYLR HGWREMCKTN GVKVNDSFVL ELVWEDDDAV  360
LKFCSKVENK GNGSGRPRKK RVCETPIVET EKRKRGRPRV SNTNSSNLRR TQQESLSVSD  420
QVANVKLSIL DTLNTVRQFR ADIEAREKNL EASSLEVDAL GERILGINQI LNNYLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1378394KKRVCETPIVETEKRKR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the reproductive meristem. {ECO:0000269|PubMed:10092172}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00022789001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622020.10.0PREDICTED: B3 domain-containing protein REM1-like isoform X2
SwissprotO650981e-180REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLA0A078IZJ10.0A0A078IZJ1_BRANA; BnaC03g77300D protein
STRINGBo3g173800.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-169B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]