PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00022822001
Common NameGSBRNA2T00022822001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 91aa    MW: 10667.9 Da    PI: 4.1851
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00022822001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.4e-09549346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                         +WT+eE e+++dav+++      +++ Ia++++  ++  ++k+++q 
  GSBRNA2T00022822001  5 SWTQEENEQFKDAVQRFSAFfpdRFECIAQRLQ--KSVVDVKEHYQE 49
                         7****************9668999********9..8*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0028253IPR001005SANT/Myb domain
PfamPF002496.8E-6449IPR001005SANT/Myb domain
SuperFamilySSF466893.83E-10457IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-4552IPR009057Homeodomain-like
CDDcd001671.39E-4551No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MAANSWTQEE NEQFKDAVQR FSAFFPDRFE CIAQRLQKSV VDVKEHYQEM VDDLLEIRSS  60
QLALSNGMFD AVEPSWCRIE KPIWDIEEHE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00022822001
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013730891.12e-60uncharacterized protein LOC106434571
TrEMBLA0A078K2E65e-60A0A078K2E6_BRANA; BnaAnng39410D protein
TrEMBLA0A3P5ZMT42e-59A0A3P5ZMT4_BRACM; Uncharacterized protein
STRINGBra034132.1-P6e-58(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15934911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.13e-11MYB family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]