PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00022857001

Common Name

GSBRNA2T00022857001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 399aa MW: 44524 Da PI: 7.7614

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00022857001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	3.8e-10	200	248	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq GSBRNA2T00022857001 200 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 248 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.28E-17	195	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.75E-10	195	252	No hit	No description
PROSITE profile	PS50888	15.485	197	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-16	198	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-7	200	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-10	203	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MGGESNEGEM GLNHGDDQSG ISRVGMPLYA KSDPFFSSTD WDPAVNVGGF SSSHYPSLAM 60 DNPGMSCFPH YHQPGSSSGY PDMPASLLPF GDCGGGGGGH FLGSDKKEES VGRLVRAGDG 120 HQVSDDVVLG GSSNRKRRQP EAESQWNKKA VEEFQEDPQS QKKQKNDQSK EKMTKESSQS 180 DEAPKENYIH MRARRGQATN SHSLAERVRR EKISERMRLL QELVPGCNKI TGKAVMLDEI 240 INYVQSLQQQ VEFLSMKLST VNPELNIDID RLLAKDSRDR NTPTLGLNPF ARFQGTIPNI 300 STTTAPQYNS LPQASNNSRN NTSCFCHHFK SIETRALVLS RMSSKENLKR ERVCIEEGFG 360 LKYHICSSML LFFLLKKNTR MIWILSCSFF FLNQECIY*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MGGESNEGEM GLNHGDDQSG ISRVGMPLYA KSDPFFSSTD WDPAVNVGGF SSSHYPSLAM  60
DNPGMSCFPH YHQPGSSSGY PDMPASLLPF GDCGGGGGGH FLGSDKKEES VGRLVRAGDG  120
HQVSDDVVLG GSSNRKRRQP EAESQWNKKA VEEFQEDPQS QKKQKNDQSK EKMTKESSQS  180
DEAPKENYIH MRARRGQATN SHSLAERVRR EKISERMRLL QELVPGCNKI TGKAVMLDEI  240
INYVQSLQQQ VEFLSMKLST VNPELNIDID RLLAKDSRDR NTPTLGLNPF ARFQGTIPNI  300
STTTAPQYNS LPQASNNSRN NTSCFCHHFK SIETRALVLS RMSSKENLKR ERVCIEEGFG  360
LKYHICSSML LFFLLKKNTR MIWILSCSFF FLNQECIY*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00022857001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK221806	0.0	AK221806.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL21-86-B04.
GenBank	BT012655	0.0	BT012655.1 Arabidopsis thaliana At1g10120 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013587345.1	0.0	PREDICTED: transcription factor bHLH74-like
Refseq	XP_013645946.1	0.0	transcription factor bHLH74-like isoform X2
Swissprot	Q6NKN9	0.0	BH074_ARATH; Transcription factor bHLH74
TrEMBL	A0A078J548	0.0	A0A078J548_BRANA; BnaA06g37950D protein
STRING	Bra019962.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5196	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	1e-171	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]