PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00023074001
Common NameGSBRNA2T00023074001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 589aa    MW: 65807.9 Da    PI: 10.2644
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00023074001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.81e-124190247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqky 47
                         + W t+E++ll +avk++G+++W+++a+++     ++ ++ +c++++ ++
  GSBRNA2T00023074001 41 QVWGTWEELLLTCAVKRHGSKDWDSVAKEVAsrssLNASAHDCRLKYEDL 90
                         68*********************************************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.18E-63793IPR009057Homeodomain-like
PROSITE profilePS512939.4853895IPR017884SANT domain
SMARTSM007173.6E-83993IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-54090IPR009057Homeodomain-like
PfamPF002491.3E-114190IPR001005SANT/Myb domain
CDDcd001679.91E-74387No hitNo description
SMARTSM002972.6E-19256365IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.0E-17258363IPR001487Bromodomain
SuperFamilySSF473704.19E-17261363IPR001487Bromodomain
CDDcd043695.19E-16263360No hitNo description
PfamPF004391.4E-12269350IPR001487Bromodomain
PROSITE profilePS5001412.761275346IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MMKEEDTAVT SNGMNDEYTN NINSCSASDN NRNGDANQIS QVWGTWEELL LTCAVKRHGS  60
KDWDSVAKEV ASRSSLNASA HDCRLKYEDL KRRFDDDDDG RGNTDDRDGG IVERLRSLRV  120
AELRREVQRR DESILSLQLK VKKLEEENDG DDKPDLEAVR SLNNETEPVR LNRETTESDH  180
RSMNESNSTA SVDKIADHER LDNSRNPDPA HKAAEEEGEG TVSRRSGMSH SGELGESGTR  240
RGQKHSGEDS SISGGNIKPA GNKSQPLVEI IKLIRSHPRG SVFESRLRSQ ETKNYKGLIR  300
QHLDIKTIEK KLEKGSYGSS SLSFYRDLKL LFTNAIVFFP TSSSEYMAAQ ELRTLVSTEM  360
KKRNGTSNHS VIKTDALSLV SRQRPSASPL VACKKKSSAL KKTFPSSRLK QKDEKKTQEV  420
SEEKTLTTAA RSSRRTSNGI EVVAKNTKMG RAKNNKKQKT DSSSDDDDDG DKEETPKTEK  480
KRAVAESEKK KSVAEFLKRI KTNSPQKVKD TTSKDQKKSA GNVKKENSKA KPRELRSNST  540
GKKKVDVENN SNKSSSKRKQ SKKEAEKVTD AGRDSGKDNQ QPKKRSRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00023074001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013663821.10.0uncharacterized protein BNAA09G55480D
TrEMBLA0A078J3900.0A0A078J390_BRANA; BnaA09g55480D protein
STRINGBra007506.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.10.0DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]