PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00023127001
Common NameGSBRNA2T00023127001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 447aa    MW: 47734.5 Da    PI: 8.3327
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00023127001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.43.8e-114568326
                         S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                         ++ C +++rtG C yG+rC+F+H+
  GSBRNA2T00023127001 45 EPDCVYYLRTGVCGYGSRCRFNHP 68
                         689********************8 PP
2zf-CCCH36.21e-1191115327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C++f+rtGtC++G++Ck++H++
  GSBRNA2T00023127001  91 QPMCQHFMRTGTCRFGATCKYHHPR 115
                          789********************96 PP
3zf-CCCH39.97e-13138162226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++++rtG+Ck+G++C+F+H+
  GSBRNA2T00023127001 138 GEKECSYYMRTGQCKFGSTCRFHHP 162
                          7899********************9 PP
4zf-CCCH41.12.9e-13291316126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +++++C++f+rtG Ck+G++C+F+H+
  GSBRNA2T00023127001 291 PGQPECQYFMRTGDCKFGNSCRFHHP 316
                          5789*********************9 PP
5zf-CCCH36.29.8e-12336362127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++t++C++fa+ G Ck+G+ CkF H++
  GSBRNA2T00023127001 336 PGTAPCSHFAQHGVCKFGPACKFDHSM 362
                          68***********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0094270IPR000571Zinc finger, CCCH-type
SMARTSM003560.0114369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-64570IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-84568IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-44867IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.95788116IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-488115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-690116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-593115IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-894115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356136164IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6136163IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10138162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4142161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.07290318IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-7290317IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10292316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6294318IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5296316IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6335362IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028335363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6336363IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-9336361IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5338362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MERYGRAGEE GLRSDPSLET GLEASMWRLG LGGGGGESYP ERLDEPDCVY YLRTGVCGYG  60
SRCRFNHPCN RAPVLGGLRT EAGEFPERMG QPMCQHFMRT GTCRFGATCK YHHPRQGGRD  120
SFTTPTSLSY MGLPLRPGEK ECSYYMRTGQ CKFGSTCRFH HPVPPGVQAP SPSQQLSTGP  180
AIYPPLQSQS VPSSQQFGLV IPRPQLLPGS YVQSPYGTYN QMVLPPPPPG MVPYSGWNPY  240
LASSISAMPS HGSQPSMGSS SVYGVRPLSP PTPAYPSGPS SNKEQTFPQR PGQPECQYFM  300
RTGDCKFGNS CRFHHPLEAA SPKGVNLSPI GLPLRPGTAP CSHFAQHGVC KFGPACKFDH  360
SMSSSSLGYS PSASSVSDMH VVPYPLGSSS LGMSAPSSSS SLSDQRTELH SSSSFKPTNT  420
TSGGSETLPA ETKTGDSASI EVKTSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00023127001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013727688.10.0zinc finger CCCH domain-containing protein 58
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A078IZT20.0A0A078IZT2_BRANA; BnaA02g35100D protein
STRINGBo2g016570.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]