PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00023137001
Common NameGSBRNA2T00023137001, LOC106431456
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 290aa    MW: 32434 Da    PI: 5.2705
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00023137001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.5e-183484256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                          ++GVr++  +g+WvAeIr+p     +  +r +lg+f t  eAa a+++a+kkl+g+
  GSBRNA2T00023137001 34 TFRGVRQRT-WGKWVAEIREP-----NhgTRLWLGTFNTSVEAAMAYDEAAKKLYGH 84
                         69****999.**********9.....336*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.91E-283389No hitNo description
SuperFamilySSF541715.82E-203490IPR016177DNA-binding domain
SMARTSM003801.3E-333497IPR001471AP2/ERF domain
PROSITE profilePS5103220.1263491IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-283490IPR001471AP2/ERF domain
PRINTSPR003672.3E-93546IPR001471AP2/ERF domain
PfamPF008471.8E-133584IPR001471AP2/ERF domain
PRINTSPR003672.3E-95773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEEEQQPPAK KRNMGRSRKG CMKGKGGPEN ATCTFRGVRQ RTWGKWVAEI REPNHGTRLW  60
LGTFNTSVEA AMAYDEAAKK LYGHEAKLNL LHTQQQQKEK VNRNLSFSDH ESGSWDYKLD  120
KVRGLDLGLV PSSGSRGSWS GSFSFIQEDD KTTSESSVFW LLPKRSDSQD QESVNAASSL  180
TFSTKLKPMT PDYGLSNGVG SRFLVEQENR TVYDVSLSCG SSDNNESILV PSVGGGEGMH  240
KTEVEEGKGY LEMDDLLEID DLGLLIGRNG DFKNWCCDEF QHPWNWFLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-153590359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A7e-1535921573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.87730.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00023137001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022563474.10.0dehydration-responsive element-binding protein 2G-like
SwissprotP618271e-151DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLA0A078J5E50.0A0A078J5E5_BRANA; BnaA02g35180D protein
STRINGBo2g016490.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-133ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]