PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00023162001
Common NameGSBRNA2T00023162001, LOC106443026
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 151aa    MW: 16819.6 Da    PI: 6.6692
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00023162001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-055072123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C + F ++  L  H++ H
  GSBRNA2T00023162001 50 FSCNYCQRKFYSSQALGGHQNAH 72
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.78E-64777No hitNo description
PROSITE profilePS5015711.0945077IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MDFQPNTSLR LSLPSYKNHQ LNLELVLEPS STSSSSSTNS SSCLEQPRVF SCNYCQRKFY  60
SSQALGGHQN AHKLERTLAK KSRELFISST TVDSDQHYPL SGRFEIYGRG YEGFVESGGR  120
MDFSGRGVPV SGLDQDQDQE MSHLDLSLRL *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at in the abscission zone (AZ) of petals, stamens, sepals and siliques. Expressed at lower levels in stamens, carpels, cotyledons, major veins of rosette leaves, trichomes of inflorescence leaves and stems. {ECO:0000269|PubMed:18192438}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00023162001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114821e-136AB011482.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2.
GenBankATHZFPB1e-136L39645.1 Arabidopsis thaliana zinc finger protein 2 (ZFP2) mRNA, complete cds.
GenBankCP0026881e-136CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013740099.11e-107zinc finger protein 2
SwissprotQ392611e-80ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A078IZU31e-105A0A078IZU3_BRANA; BnaC02g44440D protein
STRINGBo2g031330.11e-105(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-81zinc finger protein 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]