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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GSBRNA2T00023184001 |
| Common Name | GSBRNA2T00023184001, LOC106360706 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
GRAS |
| Protein Properties |
Length: 531aa MW: 58426.1 Da PI: 5.9481 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSBRNA2T00023184001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 395.2 | 7.2e-121 | 153 | 523 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90
l+e+Lle A+av++gd++ a ++ l++++s +g+p+qRl ay++e+L+arl +s+ ++y+al+++e + e ++++ +++e++P+
GSBRNA2T00023184001 153 LKEVLLEGARAVADGDFATACGFIDVLEQMVSVSGSPIQRLGAYMAEGLRARLEGSGGNIYRALKCNEPT---GRELMSYMGVLYEICPY 239
5789*****************************************************************9...99999999********* PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
kf++ +aN aIlea++g++r+H+iDf+i qG Q++ L+++La+Rp+gpp lR+Tgv++++s + l +ge+La++A+++gvpfef
GSBRNA2T00023184001 240 WKFAYTAANAAILEATAGDNRIHVIDFQIAQGSQYMFLIHELAKRPGGPPLLRVTGVDDSQSYyaRGGGLTLVGEKLANMAKSCGVPFEF 329
***********************************************************998899999********************** PP
GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
+ + + +++ e+L v+pg a++Vn+ + lh+++desvs+e++rd++L+l+ksl P++v++veqe+++n+++Fl rf+e+l+yy+a+f
GSBRNA2T00023184001 330 HD-AIMSGCEVHREHLGVEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLGPRLVTLVEQESNTNTSPFLSRFAETLDYYTAMF 418
**.788899999****************************************************************************** PP
GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
+s++a pr++++ri+ E+++++r+ivn++ace++er+erhe l+kWr r+++aGF p++ +aa a+ +l+ ++++ y++ ++g+l
GSBRNA2T00023184001 419 ESIDAARPRDDKQRISAEQHCVARDIVNMIACEERERVERHEVLGKWRVRMMMAGFVGWPVGGSAAFAASEMLKGYDKN-YKLGGSDGAL 507
*****************************************************************************66.********** PP
GRAS 359 vlgWkdrpLvsvSaWr 374
+l Wk+rp+ ++SaW+
GSBRNA2T00023184001 508 YLFWKRRPMATCSAWK 523
***************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 531 aa
Download sequence Send
to blast |
MQTSQKHHSA AGLHMLYPQP HCSPQFQMID NNGSSKESFF TLESSTASGT TLPSYDSPSS 60
VSIKSGRSPF SPQGSHSCIS DPHPSPENVY ESSLTAASSY IYDEAGVKSK IRELEDTLLS 120
SDPKVEEYSG FSPAAGKSWN WDELLALTPQ LDLKEVLLEG ARAVADGDFA TACGFIDVLE 180
QMVSVSGSPI QRLGAYMAEG LRARLEGSGG NIYRALKCNE PTGRELMSYM GVLYEICPYW 240
KFAYTAANAA ILEATAGDNR IHVIDFQIAQ GSQYMFLIHE LAKRPGGPPL LRVTGVDDSQ 300
SYYARGGGLT LVGEKLANMA KSCGVPFEFH DAIMSGCEVH REHLGVEPGF AVVVNFPYVL 360
HHMPDESVSV ENHRDRLLHL IKSLGPRLVT LVEQESNTNT SPFLSRFAET LDYYTAMFES 420
IDAARPRDDK QRISAEQHCV ARDIVNMIAC EERERVERHE VLGKWRVRMM MAGFVGWPVG 480
GSAAFAASEM LKGYDKNYKL GGSDGALYLF WKRRPMATCS AWKPNLNQIV *
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
