PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00023551001

Common Name

GSBRNA2T00023551001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 111aa MW: 13266.2 Da PI: 10.5008

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00023551001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.2	3.4e-33	31	89	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+++C+vkk+ver a+dp++v++tYeg+H h+ GSBRNA2T00023551001 31 LDDGYRWRKYGQKVVKNTQHPRSYYRCTQEKCRVKKRVERLADDPRMVITTYEGRHLHS 89 59*******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-34	16	89	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-29	24	90	IPR003657	WRKY domain
PROSITE profile	PS50811	29.505	26	91	IPR003657	WRKY domain
SMART	SM00774	5.4E-37	31	90	IPR003657	WRKY domain
Pfam	PF03106	3.5E-26	32	88	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MSTLKMKKPK TRKKVREPRF CFKTLSDVDV LDDGYRWRKY GQKVVKNTQH PRSYYRCTQE 60 KCRVKKRVER LADDPRMVIT TYEGRHLHSP SNHLDDDPLS SSHHSPLSNF F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-28	22	88	8	74	Probable WRKY transcription factor 4
2lex_A	3e-28	22	88	8	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00023551001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM593140	0.0	KM593140.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY32) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013655044.1	6e-77	probable WRKY transcription factor 13 isoform X2
Refseq	XP_022545833.1	7e-77	probable WRKY transcription factor 13 isoform X1
Swissprot	Q9SVB7	2e-69	WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBL	A0A078JZF6	6e-77	A0A078JZF6_BRANA; BnaAnng39820D protein (Fragment)
TrEMBL	A0A0A7RCI3	1e-75	A0A0A7RCI3_BRAOC; WRKY32 protein
STRING	Bo3g150120.1	2e-75	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6106	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	2e-50	WRKY DNA-binding protein 13

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]