PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00023613001

Common Name

GSBRNA2T00023613001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 341aa MW: 37301.5 Da PI: 6.5849

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00023613001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H GSBRNA2T00023613001 150 YQCKTCDRTFPSFQALGGHRASH 172 9***********99999998887 PP
2	zf-C2H2	13.2	0.00026	205	227	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H GSBRNA2T00023613001 205 HECGICGAEFTSGQALGGHMRRH 227 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.9E-12	149	174	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.61E-9	149	172	No hit	No description
PROSITE profile	PS50157	10.388	150	177	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.028	150	172	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	152	172	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.61E-9	200	227	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.7E-4	203	229	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	2.1E-11	204	229	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.93	205	229	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.047	205	227	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	207	227	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MEAFEEAIAA SKEQALILKG KRTKRQRPQS PIPFSVSPPI VEEEVSNVLD SKENDVANRK 60 KDGVVTSSSS SASWSSNNNP TLKGEEDEED QDVANCLILL SQGHSFPQHN QQLKIPHQEI 120 NNNNTYRFSS RRFLETSSSN GGGKSGYYVY QCKTCDRTFP SFQALGGHRA SHKKPRATSF 180 YSNLDLKKSI YENDAASLAN NNKVHECGIC GAEFTSGQAL GGHMRRHRGA VVVAAAPAPI 240 VTVAAAAANT ELSLSSMSYD QISDGQDHLV MPEAKKAKKM VVSLDLDLNL PAPEDENRVN 300 GLSLALKQKH EQEQEHQETK QKEEPVSLVL SAPTLVDCYY *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00023613001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013627375.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A078J3R4	0.0	A0A078J3R4_BRANA; BnaC03g71210D protein
STRING	Bo3g002780.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2231	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-132	C2H2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]