PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00023654001
Common NameGSBRNA2T00023654001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 148aa    MW: 16940 Da    PI: 10.16
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00023654001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof61.61.5e-191066360
               zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggr.rknkk 60
                          + +kc rC+s+ntkfCy+ n   sqPry C+ Crr W    alrn+P+Gg r rk k+
  GSBRNA2T00023654001 10 PSRRKCRRCNSDNTKFCYFVN--SSQPRYTCRYCRRSWIYRWALRNIPMGGERgRKTKR 66
                         67899**************87..67*************************987355444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-10766IPR003851Zinc finger, Dof-type
PROSITE profilePS5088417.4671365IPR003851Zinc finger, Dof-type
PfamPF027019.0E-171365IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDKLVSEKKP SRRKCRRCNS DNTKFCYFVN SSQPRYTCRY CRRSWIYRWA LRNIPMGGER  60
GRKTKRQKID QPSVSQVNSA ENHFGSFSVV LALPAQNVPP MDRMEVSDGS FYQGYHDVGS  120
NGANQEDPNK NLNASTDHMI KNNNNNV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00023654001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728780.0AC172878.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH069E01, complete sequence.
GenBankAC2410200.0AC241020.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018512894.11e-101PREDICTED: dof zinc finger protein DOF4.4-like
SwissprotQ9SUA94e-27DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A078J3V11e-106A0A078J3V1_BRANA; BnaA03g58580D protein
STRINGBra038790.1-P1e-100(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2638623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.12e-29Dof-type zinc finger domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]