PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00024141001
Common NameGSBRNA2T00024141001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 471aa    MW: 51648 Da    PI: 6.5018
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00024141001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH331e-104469126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         ++++ C++f+rtG C yG++C+++H+
  GSBRNA2T00024141001 44 PGERDCHYFLRTGKCGYGSSCRYNHP 69
                         5789*********************9 PP
2zf-CCCH37.15.5e-1290114327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C +f++tG CkyG+ Ck++H++
  GSBRNA2T00024141001  90 QPDCEYFLKTGACKYGAACKYNHPK 114
                          789********************96 PP
3zf-CCCH30.75.3e-10135159327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C+++++ G C++G  CkF+H++
  GSBRNA2T00024141001 135 EKSCPYYMQKGMCRFGVACKFHHPQ 159
                          667********************97 PP
4zf-CCCH43.36e-14227251327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++Crff++tGtCkyGd+Ck++H++
  GSBRNA2T00024141001 227 RAECRFFMKTGTCKYGDSCKYSHPK 251
                          799********************96 PP
5zf-CCCH34.82.8e-11272297126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ++++ C +f ++G+CkyG++CkF H+
  GSBRNA2T00024141001 272 PGQPACGNFKAYGFCKYGANCKFDHP 297
                          57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5874371IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-54370IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-84569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-64771IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-44969IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-687114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84987115IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-990114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-591115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-493113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6131160IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4132159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638132160IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-7134159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-4137158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.084224252IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-9225251IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-11227251IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-7227253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-7230251IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6268297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.277271299IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6271298IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8273297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4277296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MSETQQVQNS TGSIPSSDKT EDTLTKVKVN EENMDEPSLF PDRPGERDCH YFLRTGKCGY  60
GSSCRYNHPV SHVPEAVFYH REELPERVGQ PDCEYFLKTG ACKYGAACKY NHPKDRNGAG  120
PVLFNTLGYP MRQGEKSCPY YMQKGMCRFG VACKFHHPQT HNAQPTSFPF GGSLPVMSLA  180
PATYEAMSRP QALHPQAYSF MVAPPQGWST FMGGYDMKTE LDSSSERAEC RFFMKTGTCK  240
YGDSCKYSHP KERMLLSPPP NLFNPVVLPA RPGQPACGNF KAYGFCKYGA NCKFDHPVPV  300
NTYNNTGSTM PSPPSAYAPP VSTPVRITSP PSRSNGGDKP AAEDNSSETV KEEDGPEKSE  360
VQDDDPSPPF SDANQSGFVW VAAVTQPDLE KRVDVGGYGY PAMVAMNVKK GVYTPLRSAF  420
ELQHLLEFVK DAGAGGKGNL PMNGTPEIVK TKAWDGTNGE VMEEDIYILT *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.282450.0microspore| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00024141001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013648869.10.0zinc finger CCCH domain-containing protein 26-like
SwissprotO487721e-167C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLA0A078GBF20.0A0A078GBF2_BRANA; BnaC04g43420D protein
STRINGBra021817.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.11e-151zinc finger nuclease 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]