PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00024248001

Common Name

GSBRNA2T00024248001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

AP2

Protein Properties

Length: 426aa MW: 47352.3 Da PI: 9.1059

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00024248001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.7	2.8e-13	89	140	9	55
AP2 9 dkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g GSBRNA2T00024248001 89 HRWTGRYEAHLWDkTTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 140 899********777744468557***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	17.767	63	148	IPR001471	AP2/ERF domain
SMART	SM00380	6.5E-19	82	154	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.41E-14	85	149	IPR016177	DNA-binding domain
Pfam	PF00847	5.8E-9	89	140	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.5E-12	89	149	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MASSDQGPKT EAGGGGESSE TVAASDEMLL YRGFKKAKKE RGCTAKERIS KMPPCTAGKR 60 SSIYRGVTRF RKLSLRFLII IAIGGMLMHR WTGRYEAHLW DKTTWNQNQN KKGKQVYLGA 120 YDDEEAAARA YDLAALKYWG PGTLINFPVT DYSRDLEEMQ NLSREEYLAS LRRKSSGFSR 180 GIAKYRGLQS RWDASASRMP GPDYFSNVHY GDERGTEGDF LGNFCLERKI DLTGYIKWWG 240 VNKPRQPESS SSKASEDAKI EDAGTELKTL EHTSHATEPF KAPNLGVLQR KEKQISSSAL 300 SILSASPAYK SLEEKVLKIQ ESSSSVREND ENVNRNIINM EKSHGKEIEK PAVSLGSGSA 360 FSLQKSMYPL TSLLTSPLLT NYNTLDPLGD PILWTQFLPP GSSHTSEVTK TETSCSTYSC 420 LPQEK*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MASSDQGPKT EAGGGGESSE TVAASDEMLL YRGFKKAKKE RGCTAKERIS KMPPCTAGKR  60
SSIYRGVTRF RKLSLRFLII IAIGGMLMHR WTGRYEAHLW DKTTWNQNQN KKGKQVYLGA  120
YDDEEAAARA YDLAALKYWG PGTLINFPVT DYSRDLEEMQ NLSREEYLAS LRRKSSGFSR  180
GIAKYRGLQS RWDASASRMP GPDYFSNVHY GDERGTEGDF LGNFCLERKI DLTGYIKWWG  240
VNKPRQPESS SSKASEDAKI EDAGTELKTL EHTSHATEPF KAPNLGVLQR KEKQISSSAL  300
SILSASPAYK SLEEKVLKIQ ESSSSVREND ENVNRNIINM EKSHGKEIEK PAVSLGSGSA  360
FSLQKSMYPL TSLLTSPLLT NYNTLDPLGD PILWTQFLPP GSSHTSEVTK TETSCSTYSC  420
LPQEK*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00024248001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT025985	0.0	BT025985.1 Arabidopsis thaliana At2g41710 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013631225.1	0.0	PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
Refseq	XP_013686290.1	0.0	AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
Swissprot	Q8GWK2	0.0	AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBL	A0A078GGR8	0.0	A0A078GGR8_BRANA; BnaC04g02040D protein
STRING	Bo4g013420.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10815	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41710.3	0.0	AP2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]