PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00024327001

Common Name

GSBRNA2T00024327001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 356aa MW: 39585.4 Da PI: 6.0158

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00024327001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.5e-10	138	195	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l+ + l se GSBRNA2T00024327001 138 KRAKRIIANRQSAARSKERKARYIMELERKVQTLQTEATTLSAQLSLFQRDTTGLSSE 195 9*****************************************9999887776666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.6E-17	134	198	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.68	136	199	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.06E-10	138	189	No hit	No description
Pfam	PF00170	1.8E-9	138	196	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.3E-11	138	192	No hit	No description
CDD	cd14703	2.87E-23	139	188	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MDDSSNAKSN QCPPPLSNPT PTPFRGPYHR RAHSEVQFRL PEDLDLSEPF GGFDDLGSED 60 DIFCTYMDVE KLGSGSDSAG PRSDNPLFSG EEGGSSSSRP RHRHSLSVDG GSSSLESIEA 120 KKAMAPDKLA ELWVVDPKRA KRIIANRQSA ARSKERKARY IMELERKVQT LQTEATTLSA 180 QLSLFQRDTT GLSSENTELK LRLQVMEQQA KLRDALNEQL KEEVERLKFA TGEVSHADAY 240 DLGMAHMQYS QQQQQPPQQQ SFFQHHHHQQ QQTDAQNLQQ MTHQFHLFQP NNNNNNQNPN 300 IMHQATSNAS GQSHSFAEAM SEDPPGRLQG LDISSCGRGS NFGRSDTVSE SSSTM*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MDDSSNAKSN QCPPPLSNPT PTPFRGPYHR RAHSEVQFRL PEDLDLSEPF GGFDDLGSED  60
DIFCTYMDVE KLGSGSDSAG PRSDNPLFSG EEGGSSSSRP RHRHSLSVDG GSSSLESIEA  120
KKAMAPDKLA ELWVVDPKRA KRIIANRQSA ARSKERKARY IMELERKVQT LQTEATTLSA  180
QLSLFQRDTT GLSSENTELK LRLQVMEQQA KLRDALNEQL KEEVERLKFA TGEVSHADAY  240
DLGMAHMQYS QQQQQPPQQQ SFFQHHHHQQ QQTDAQNLQQ MTHQFHLFQP NNNNNNQNPN  300
IMHQATSNAS GQSHSFAEAM SEDPPGRLQG LDISSCGRGS NFGRSDTVSE SSSTM*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269\|PubMed:27896439}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00024327001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY074269	0.0	AY074269.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds.
GenBank	AY096746	0.0	AY096746.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds.
GenBank	Z86093	0.0	Z86093.1 A.thaliana mRNA for b-Zip DNA binding protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013692052.1	0.0	transcription factor RF2b-like
Swissprot	O22873	0.0	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A078GEY1	0.0	A0A078GEY1_BRANA; BnaC04g01480D protein
TrEMBL	A0A3P6C3K9	0.0	A0A3P6C3K9_BRAOL; Uncharacterized protein
STRING	Bo4g012700.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-168	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]