PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00024330001
Common NameGSBRNA2T00024330001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 244aa    MW: 28085.7 Da    PI: 9.8697
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00024330001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.62.9e-24992262128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyat.gkrknratksgyWkatg 87 
                          ppG rF Pt+   v  +L++kv++kk     +i+++d+yk +Pw L+ +v++    + ewy+F++r+k+ a+  +r+ r    g+Wk+t 
  GSBRNA2T00024330001  99 PPGSRFLPTNLGCVRVHLRNKVDKKKSG---FITTLDLYKDDPWLLD-HVQNdlfPRGEWYYFTPRNKRGASsCTRTVRGRGGGTWKSTS 184
                          9************************955...5**************8.3433233445********9998753789999999******** PP

                  NAM  88 kdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                           ++++++k++++ g k++Lv+ k   + k e t W m ey l
  GSBRNA2T00024330001 185 GKEPIKDKDEKVQGYKQSLVYNKTnVNGKIEPTGWNMTEYCL 226
                          *********************96525566679********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-3195240IPR003441NAC domain
PROSITE profilePS5100532.32698242IPR003441NAC domain
PfamPF023655.0E-1599226IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEKMNRDHQS KSKVDESSSK SNYVLGREEG SSSSHSHVNN LQEQQRLMML RSQGMPPPPP  60
VNHMYNLEEH QRRMLHYHRM PHTDPSSSSI NTVKGRVYPP GSRFLPTNLG CVRVHLRNKV  120
DKKKSGFITT LDLYKDDPWL LDHVQNDLFP RGEWYYFTPR NKRGASSCTR TVRGRGGGTW  180
KSTSGKEPIK DKDEKVQGYK QSLVYNKTNV NGKIEPTGWN MTEYCLYEEN QDDLVLCRIK  240
GNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-159923918162NO APICAL MERISTEM PROTEIN
1ut4_B2e-159923918162NO APICAL MERISTEM PROTEIN
1ut7_A2e-159923918162NO APICAL MERISTEM PROTEIN
1ut7_B2e-159923918162NO APICAL MERISTEM PROTEIN
4dul_A2e-159923918162NAC domain-containing protein 19
4dul_B2e-159923918162NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00024330001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022556272.11e-146NAC domain-containing protein 6-like
TrEMBLA0A078GFI20.0A0A078GFI2_BRANA; BnaC04g01450D protein
TrEMBLA0A3P6BZZ90.0A0A3P6BZZ9_BRAOL; Uncharacterized protein
STRINGBra004579.1-P1e-153(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14026919
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.12e-26NAC domain containing protein 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]