PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00024336001

Common Name

GSBRNA2T00024336001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 369aa MW: 41887.1 Da PI: 4.8738

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00024336001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	77.4	3.3e-24	31	158	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyat.gkrknratksgyWkatg 87 ppG rF Pt+ v +L++kv++kk +i+++d+yk +Pw L+ +v++ + ewy+F++r+k+ a+ +r+ r g+Wk+t GSBRNA2T00024336001 31 PPGSRFLPTNLGCVRVHLRNKVDKKKSG---FITTLDLYKDDPWLLD-HVQNdlfPRGEWYYFTPRNKRGASsCTRTVRGRGGGTWKSTS 116 9**********************955...5**********8.3433233445****9998753789999999**** PP NAM 88 kdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 +k++++k++++ g k++Lv+ k + k e t W m ey l GSBRNA2T00024336001 117 VKKPIKDKDEKVQGYKQSLVYNKTnVNGKIEPTGWNMTEYCL 158 *****************96525566679******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.02E-31	22	172	IPR003441	NAC domain
PROSITE profile	PS51005	32.578	30	174	IPR003441	NAC domain
Pfam	PF02365	1.5E-14	31	158	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MEKMNREHQS KSKVDESSSK SNYTCLAPVY PPGSRFLPTN LGCVRVHLRN KVDKKKSGFI 60 TTLDLYKDDP WLLDHVQNDL FPRGEWYYFT PRNKRGASSC TRTVRGRGGG TWKSTSVKKP 120 IKDKDEKVQG YKQSLVYNKT NVNGKIEPTG WNMTEYCLYE ENQDDLVLCR IKGNLEKKGF 180 AEEVKNNILS KQVQDHEEEA GANGVEMRTL EEDHGDTTQQ PQQQEQEAQV VYIPPHHEGQ 240 GLGVEQEDHG DATQQQQQEQ DAPPVLAPPS LHESHELGFE TMITMRQDDH GDATQKQQQE 300 QDSPQVLAPP SWFWTPNNDK NFMPVLDENQ QYQFDDLDLC FESIKNDANE AHLQPVSHAQ 360 DAVGGSSD*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MEKMNREHQS KSKVDESSSK SNYTCLAPVY PPGSRFLPTN LGCVRVHLRN KVDKKKSGFI  60
TTLDLYKDDP WLLDHVQNDL FPRGEWYYFT PRNKRGASSC TRTVRGRGGG TWKSTSVKKP  120
IKDKDEKVQG YKQSLVYNKT NVNGKIEPTG WNMTEYCLYE ENQDDLVLCR IKGNLEKKGF  180
AEEVKNNILS KQVQDHEEEA GANGVEMRTL EEDHGDTTQQ PQQQEQEAQV VYIPPHHEGQ  240
GLGVEQEDHG DATQQQQQEQ DAPPVLAPPS LHESHELGFE TMITMRQDDH GDATQKQQQE  300
QDSPQVLAPP SWFWTPNNDK NFMPVLDENQ QYQFDDLDLC FESIKNDANE AHLQPVSHAQ  360
DAVGGSSD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-15	31	171	18	162	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-15	31	171	18	162	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-15	31	171	18	162	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-15	31	171	18	162	NO APICAL MERISTEM PROTEIN
3swm_A	1e-15	31	171	21	165	NAC domain-containing protein 19
3swm_B	1e-15	31	171	21	165	NAC domain-containing protein 19
3swm_C	1e-15	31	171	21	165	NAC domain-containing protein 19
3swm_D	1e-15	31	171	21	165	NAC domain-containing protein 19
3swp_A	1e-15	31	171	21	165	NAC domain-containing protein 19
3swp_B	1e-15	31	171	21	165	NAC domain-containing protein 19
3swp_C	1e-15	31	171	21	165	NAC domain-containing protein 19
3swp_D	1e-15	31	171	21	165	NAC domain-containing protein 19
4dul_A	1e-15	31	171	18	162	NAC domain-containing protein 19
4dul_B	1e-15	31	171	18	162	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00024336001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022556272.1	0.0	NAC domain-containing protein 6-like
TrEMBL	A0A078GGX5	0.0	A0A078GGX5_BRANA; BnaC04g01390D protein
STRING	Bra004575.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14026	9	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03490.1	2e-25	NAC domain containing protein 6

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]