PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00024698001
Common NameGSBRNA2T00024698001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 457aa    MW: 51305.9 Da    PI: 10.1437
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00024698001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001195117123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y C+ C+k F++  +L  Hir H
  GSBRNA2T00024698001  95 YMCKFCNKKFPSGKSLGGHIRIH 117
                          89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.1E-692119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.6E-692120No hitNo description
PROSITE profilePS5015711.5195122IPR007087Zinc finger, C2H2
SMARTSM003550.006195117IPR015880Zinc finger, C2H2-like
PfamPF139125.0E-596113IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SMARTSM003550.4155178IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307155183IPR007087Zinc finger, C2H2
SuperFamilySSF576671.94E-5156177No hitNo description
PROSITE patternPS000280156178IPR007087Zinc finger, C2H2
PfamPF139120.089156180IPR007087Zinc finger, C2H2
SuperFamilySSF576671.94E-5351378No hitNo description
PROSITE profilePS501579.162356379IPR007087Zinc finger, C2H2
SMARTSM003550.19356378IPR015880Zinc finger, C2H2-like
PfamPF139125.1E-8356378IPR007087Zinc finger, C2H2
PROSITE patternPS000280358378IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MPWIHLRYWS GHRMLVKARI SVRVLSRFMA KERILNFDGG RFSPDLHLAR TTVTSQTLIP  60
KKASSFVVLC SIFLSLFGVG SFVLRSMEKM IEREYMCKFC NKKFPSGKSL GGHIRIHTNH  120
YSLLSSSYNN AKNPKKKKKK KKKKRLVAMK QQQQLCCREC GKAFDSLKAL WNHMDCCHCE  180
GEKLVMDSQS DTETTSSGPT RKRSKKQFSS ESFSNGSSSS SACEIDQEHK NSVLSLMMMS  240
MDSRGLTLVV NSLVAESSEN NSVGDDNGAI LYDSYSSDSD YFMNGPKRSD SAISVDGCLS  300
NNGDDLAVKE GRSKYELRKS KRVVLPCYES DSCAVDTNSK IHSKKAISAN KNGKCHECPF  360
CFRVFKSGQA LGGHKRSHSF VNQEHRVKHK AADMRIDLNH FLKVGSVKNR IESIPSPKLS  420
PVKFHGSLPF NSFTSSSPTY DFLRYLKPLL MINDNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134143KKKKKKKKKK
2136144KKKKKKKKR
3138144KKKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00024698001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627232.10.0PREDICTED: zinc finger protein ZAT9-like
RefseqXP_013627233.10.0PREDICTED: zinc finger protein ZAT9-like
RefseqXP_013627234.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A078GCC70.0A0A078GCC7_BRANA; BnaC03g57420D protein
STRINGBo3g137160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.17e-62C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]