PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00024885001

Common Name

GSBRNA2T00024885001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 107aa MW: 12182 Da PI: 9.9347

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00024885001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.1	1.3e-15	20	67	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll ++++ G g+W++ a+ g++R +k+c++rw++yl GSBRNA2T00024885001 20 KGPWTLEEDTLLTNYIAHNGEGRWNLLAKSSGLKRKGKSCRLRWLNYL 67 79****************************99***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-20	13	70	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.04	15	71	IPR017930	Myb domain
SMART	SM00717	1.7E-12	19	69	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-14	20	67	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.09E-21	21	94	IPR009057	Homeodomain-like
CDD	cd00167	9.30E-9	22	67	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.6E-6	71	93	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MSNIMKKRCN ENEESAEQRK GPWTLEEDTL LTNYIAHNGE GRWNLLAKSS GLKRKGKSCR 60 LRWLNYLKPD IKRGNLTPQE QLLILELHCK WGNSGSFVKA GDLLVL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	57	LKRKGKS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269\|PubMed:19529828}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269\|PubMed:19529828}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00024885001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:19529828}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM975663	1e-156	KM975663.1 Brassica napus MYB transcription factor 116.1 (MYB116.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009103061.1	9e-62	PREDICTED: transcription factor MYB24-like
Refseq	XP_013708812.1	1e-61	transcription factor MYB62-like
Swissprot	Q9C9G7	3e-43	MYB62_ARATH; Transcription factor MYB62
TrEMBL	A0A078J6G3	4e-71	A0A078J6G3_BRANA; BnaA07g36940D protein
STRING	Bra012482.1-P	3e-61	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25340.1	1e-59	myb domain protein 116

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]