PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00025013001
Common NameGSBRNA2T00025013001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27508.5 Da    PI: 9.9873
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00025013001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.79.9e-31959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva++ifss+gkl+eys+
  GSBRNA2T00025013001  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYST 59
                         79***********************************************96 PP
2K-box103.13.6e-34771743100
                K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                          +++ +  e +++e++  e+akLk++ie L++++R+++GedL+sLslkeLq+Le+qL+ ++k+iRs+Kn+ ++e+i+ lqkk k+lq++n+
  GSBRNA2T00025013001  77 DKQLVGREISQSENWVLEHAKLKARIEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKALQDHNN 166
                          566677788999****************************************************************************** PP

                K-box  93 aLrkklee 100
                          aL kk++e
  GSBRNA2T00025013001 167 ALLKKIKE 174
                          *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.562161IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-33291IPR002100Transcription factor, MADS-box
CDDcd002651.29E-39279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.9E-2884172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.80388178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALVIFSS KGKLFEYSTD  60
SCMERILERY DRYLYSDKQL VGREISQSEN WVLEHAKLKA RIEVLEKNKR NFMGEDLDSL  120
SLKELQSLEH QLHAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNALLK KIKEREKNTV  180
QQGGQLIQCS NSSSILQPQY CLTSSRDGFV GRVGEENGVA SSLAEPNSLL PAWMLRPTTN  240
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-22173172MEF2C
5f28_B4e-22173172MEF2C
5f28_C4e-22173172MEF2C
5f28_D4e-22173172MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.239110.0vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in apical meristems in transition to flowering.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00025013001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5058420.0AJ505842.1 Brassica oleracea var. botrytis mRNA for MADS-box protein FUL-b.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022561167.11e-178agamous-like MADS-box protein AGL8 homolog isoform X2
SwissprotQ412741e-168AGL8_SINAL; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A078J6L91e-176A0A078J6L9_BRANA; BnaC07g49790D protein
TrEMBLA0A3P6F4Z31e-176A0A3P6F4Z3_BRAOL; Uncharacterized protein
STRINGBo7g098190.11e-176(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-166AGAMOUS-like 8
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Menzel G,Apel K,Melzer S
    Identification of two MADS box genes that are expressed in the apical meristem of the long-day plant Sinapis alba in transition to flowering.
    Plant J., 1996. 9(3): p. 399-408
    [PMID:8919916]