PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00025034001
Common NameGSBRNA2T00025034001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 111aa    MW: 12135.3 Da    PI: 4.3416
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00025034001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.56.7e-0811372753
                  AP2 27 krkrfslgkfgtaeeAakaaiaarkkl 53
                         +r+r +lg+f+taeeAa a+ a+ ++ 
  GSBRNA2T00025034001 11 QRARLWLGTFDTAEEAAIAYQAFILRS 37
                         469******************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.48152IPR001471AP2/ERF domain
SMARTSM003803.1E-5351IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-121046IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-81146IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MGRRDTQATE QRARLWLGTF DTAEEAAIAY QAFILRSHNA TLNFPEHFVN KEVELHDETD  60
ASSSLDQKQP ETLLANKVNL GSNEVAVSDG GVEDGMAEAW LNAVTSRWGS *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00025034001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596598.13e-49PREDICTED: ethylene-responsive transcription factor ERF054-like
SwissprotQ9M0J36e-40ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLA0A078J6B03e-75A0A078J6B0_BRANA; BnaC07g50570D protein
STRINGBo7g111890.13e-72(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.12e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]