PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00025662001

Common Name

GSBRNA2T00025662001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 335aa MW: 38073.6 Da PI: 7.1196

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00025662001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	7.2e-12	157	203	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L l+P + kK++Ka++L A ++Ik+Lq GSBRNA2T00025662001 157 DHIIAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDAQKHIKYLQ 203 699**********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.85	153	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-9	157	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-16	157	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.27E-11	158	206	No hit	No description
SuperFamily	SSF47459	2.88E-16	158	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-13	159	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MNMFSTRLFS DQELEENGII QQYGMNTIMG EIHEAHHTLP HSFPTRMLTT NDPSYDDLID 60 MKPSKILETT YISPKLQPPP SFPLPPYSKP HFHHQPSSRI LSFENATQNV MDNELSPTYQ 120 NSIFSPKVEA EVPPNWMNGK GTKRAQPLYK SQSNAQDHII AERKRREKLT QRFVALSALV 180 PGLKKMDKAS VLGDAQKHIK YLQEKVGEFE EQKRERRLES MVLVKKSKLI LDDNNQSTSS 240 SCCEDDSSTL DLPEIEVKFS DKDVLIKILC EKQKGHVAKI MAEVEKFHFS ITNSSVLPFG 300 PTLDITIIAK KESDFDMTLM DVVKSLRSAL SKFM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	166	ERKRRE
2	162	167	RKRREK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00025662001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488567	0.0	AF488567.1 Arabidopsis thaliana clone bHLH025 putative bHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013655007.1	0.0	transcription factor bHLH25-like
Swissprot	Q9T072	1e-175	BH025_ARATH; Transcription factor bHLH25
TrEMBL	A0A078JZS5	0.0	A0A078JZS5_BRANA; BnaA08g31080D protein
STRING	Bra010617.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM492	27	146

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-163	bHLH family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]