PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00025692001
Common NameGSBRNA2T00025692001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 199aa    MW: 21633.7 Da    PI: 8.7286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00025692001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000151941223
                         EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                         +C+ C + F ++ +L +H +t H
  GSBRNA2T00025692001 19 ECSLCQRIFFTPQDLITHTNTfH 41
                         7*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.0371846IPR007087Zinc finger, C2H2
PROSITE patternPS0002802041IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MNGGFGMRKD LTRVSNPLEC SLCQRIFFTP QDLITHTNTF HSNHHYSNFS SSAAAPAPAT  60
FRHYPNLNRN PNPAFPAMNR SDLNNYRSGP TDEQGRLLKG SAAMTPARNT NVLFGQQEKP  120
KLMDLFPTMP SEGLRTLPLL SQLEERTPQD TATEQGGAIS SSIDLTLRLV AVVVVAAAIS  180
VVVAVGMIIV ISILFSYN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00025692001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892460.0AC189246.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB017P15, complete sequence.
GenBankAC2324370.0AC232437.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002B23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013658992.11e-123uncharacterized protein LOC106363864
RefseqXP_013700135.11e-123uncharacterized protein LOC106403901
TrEMBLA0A078J4Z91e-144A0A078J4Z9_BRANA; BnaC08g50080D protein
TrEMBLA0A3P6GSX71e-144A0A3P6GSX7_BRAOL; Uncharacterized protein
STRINGBo8g115550.11e-112(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135511321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04445.14e-33C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]