PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00025985001

Common Name

GSBRNA2T00025985001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YB

Protein Properties

Length: 187aa MW: 20667.9 Da PI: 7.6202

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00025985001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.3	7.1e-56	20	116	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 vreqdrflPian+srimk+ lPan+ki+kdake++qecvsefisfvtseasdkcqrekrktingddllwa+atlGfe+y+eplk+yl++y GSBRNA2T00025985001 20 VREQDRFLPIANISRIMKRGLPANGKIAKDAKEILQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEEYIEPLKLYLTRY 109 69************************************************************************************** PP NF-YB 91 relegek 97 re+ g++ GSBRNA2T00025985001 110 REVYGDS 116 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.5E-53	16	145	IPR009072	Histone-fold
SuperFamily	SSF47113	6.29E-40	23	137	IPR009072	Histone-fold
Pfam	PF00808	3.5E-27	26	90	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.9E-21	54	72	No hit	No description
PROSITE pattern	PS00685	0	57	73	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.9E-21	73	91	No hit	No description
PRINTS	PR00615	1.9E-21	92	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MAESQTNSPG DQSPRSSSHV REQDRFLPIA NISRIMKRGL PANGKIAKDA KEILQECVSE 60 FISFVTSEAS DKCQREKRKT INGDDLLWAM ATLGFEEYIE PLKLYLTRYR EVYGDSKGSA 120 RGGDANANRD GQSSQNGQFS QFAHQGSYPQ GPYGNSQVTF PLLLFHTHSE YVSATHITTQ 180 IISSAK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-46	20	111	1	92	Transcription factor HapC (Eurofung)
4g92_B	1e-46	20	111	1	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00025985001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141626.1	1e-106	PREDICTED: nuclear transcription factor Y subunit B-8-like
Swissprot	Q8VYK4	4e-93	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A078K009	1e-137	A0A078K009_BRANA; BnaCnng76740D protein
STRING	Bra017209.1-P	1e-127	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1480	27	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	4e-85	nuclear factor Y, subunit B8

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]