PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00026341001

Common Name

GSBRNA2T00026341001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 562aa MW: 62922.3 Da PI: 5.4279

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00026341001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00056	18	37	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C++Cgk s ++ Lk+H++ GSBRNA2T00026341001 18 QCKHCGKQMSGWYRLKHHLS 37 8*****************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04937	1.1E-38	112	257	IPR007021	Domain of unknown function DUF659
SuperFamily	SSF53098	1.74E-24	126	528	IPR012337	Ribonuclease H-like domain
Pfam	PF05699	5.9E-5	461	548	IPR008906	HAT, C-terminal dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MDIHEHGVRV GKEKRRIQCK HCGKQMSGWY RLKHHLSGVG GDATPCLQVT SSVREAFRTT 60 TTTTGSKRGR SGDSKANEQV WCSYPNCFDF SSNGFREMMM TVSGRTIPDP HGSMFREVLK 120 EVEDHVEKVK DSWAVTGCSI LLDAWVDHKG HDLVTFVADS PAGSVYLKSF DVSDIKHDSK 180 ALISLVDGLV DEVGVHNVIQ IVACSASGWV GELGESYVGN KKGVFWSVSV SHCFELMLMK 240 IGEIDSLGEL VEAVNMITDY VNSNPLALKL VRDQDHSHGL LDMAVLSSEF EFFMPYLTVE 300 SIFRAKDELA AMFASSSDWN KEEEDIAISN LVNDSSLWET VERVLKCSSP LIHGLIWLSS 360 ANNNQHVGHV YDNMDVIKES IAREFDNDEL CYMPLWDVID DVWNKLHSPL HAAGYFLNPD 420 AFYSTGFHLD AEVAIGLISS LVHIVKELDV QVKVATQLDV YKVREGCFNE TSQADQVYGL 480 SPAEWWAEKA SQHPELQSFA IKILSQTCEG ASRYMLKRNV AEKLLLTRGM SRCEKQHLEE 540 LAFVHYNLHL QSCRAKLSEE Q*

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MDIHEHGVRV GKEKRRIQCK HCGKQMSGWY RLKHHLSGVG GDATPCLQVT SSVREAFRTT  60
TTTTGSKRGR SGDSKANEQV WCSYPNCFDF SSNGFREMMM TVSGRTIPDP HGSMFREVLK  120
EVEDHVEKVK DSWAVTGCSI LLDAWVDHKG HDLVTFVADS PAGSVYLKSF DVSDIKHDSK  180
ALISLVDGLV DEVGVHNVIQ IVACSASGWV GELGESYVGN KKGVFWSVSV SHCFELMLMK  240
IGEIDSLGEL VEAVNMITDY VNSNPLALKL VRDQDHSHGL LDMAVLSSEF EFFMPYLTVE  300
SIFRAKDELA AMFASSSDWN KEEEDIAISN LVNDSSLWET VERVLKCSSP LIHGLIWLSS  360
ANNNQHVGHV YDNMDVIKES IAREFDNDEL CYMPLWDVID DVWNKLHSPL HAAGYFLNPD  420
AFYSTGFHLD AEVAIGLISS LVHIVKELDV QVKVATQLDV YKVREGCFNE TSQADQVYGL  480
SPAEWWAEKA SQHPELQSFA IKILSQTCEG ASRYMLKRNV AEKLLLTRGM SRCEKQHLEE  540
LAFVHYNLHL QSCRAKLSEE Q*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00026341001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013749617.2	0.0	uncharacterized protein BNAC01G38100D
TrEMBL	A0A078GCL1	0.0	A0A078GCL1_BRANA; BnaC01g38100D protein
STRING	Bo1g138700.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3105	3	4

Link Out ? help Back to Top
Entrez Gene	106452138

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]