PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00026353001

Common Name

GSBRNA2T00026353001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 308aa MW: 35508.8 Da PI: 8.5754

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00026353001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.7	2e-48	25	153	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pGfrFhPtdeelv +yL kkv kk +++e+i+++diyk++PwdLp + +++eke yfF++r +ky+++ r+nr+t sg+Wkatg dk GSBRNA2T00026353001 25 LPGFRFHPTDEELVGFYLSKKVFLKKsSKIDEIISQIDIYKFDPWDLP-RSSNTEKESYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDK 113 59*****************877774778889***********.5556789****************************** PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s +++++glkktLv+y g+a kg+ktdW+mhe+rl GSBRNA2T00026353001 114 PVYSDgsSKAVIGLKKTLVYYLGSAGKGSKTDWMMHEFRL 153 9666677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	50.798	24	188	IPR003441	NAC domain
SuperFamily	SSF101941	6.54E-50	24	188	IPR003441	NAC domain
Pfam	PF02365	2.8E-24	26	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MEEAMGSWDT RREEQEEEEK QVLKLPGFRF HPTDEELVGF YLSKKVFLKK SSKIDEIISQ 60 IDIYKFDPWD LPRSSNTEKE SYFFCRRGRK YRNSIRPNRV TGSGFWKATG IDKPVYSDGS 120 SKAVIGLKKT LVYYLGSAGK GSKTDWMMHE FRLPTANDTI PGGSTLVNPT PSSLLHAEVW 180 TLCRIFKRNV SSRKYTPDWR ELAGGKRMKP QQSKYQEAYI SFGDNESSSS TNNINVMERK 240 ENYERNVFQL RQTPHQHQPI PVDTTITTQV DSTVPHFSND NIHDITYENW DELRSVVEFA 300 FGPSFLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-43	15	194	7	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-43	15	194	7	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-43	15	194	7	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-43	15	194	7	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-43	15	194	10	174	NAC domain-containing protein 19
3swm_B	2e-43	15	194	10	174	NAC domain-containing protein 19
3swm_C	2e-43	15	194	10	174	NAC domain-containing protein 19
3swm_D	2e-43	15	194	10	174	NAC domain-containing protein 19
3swp_A	2e-43	15	194	10	174	NAC domain-containing protein 19
3swp_B	2e-43	15	194	10	174	NAC domain-containing protein 19
3swp_C	2e-43	15	194	10	174	NAC domain-containing protein 19
3swp_D	2e-43	15	194	10	174	NAC domain-containing protein 19
4dul_A	2e-43	15	194	7	171	NAC domain-containing protein 19
4dul_B	2e-43	15	194	7	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269\|PubMed:22345491}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00353	DAP	Transfer from AT3G12910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00026353001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026645	1e-91	AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6.
GenBank	CP002686	1e-91	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022567377.1	0.0	transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	1e-73	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A078GHY0	0.0	A0A078GHY0_BRANA; BnaC01g38180D protein
STRING	Bo1g138800.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12910.1	1e-171	NAC family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]