PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00026379001
Common NameGSBRNA2T00026379001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 237aa    MW: 26882.3 Da    PI: 8.2219
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00026379001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151764148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W+ eE e+l+  + + G ++W++I++  g+ R++k+c++rw +yl
  GSBRNA2T00026379001 17 RGPWSDEESEILKAFILKNGHRNWRSIPKLAGLMRCGKSCRLRWVNYL 64
                         89********************************************97 PP
2Myb_DNA-binding491.4e-1570114148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T+eE++ ++++++ lG++ W++Ia+++g  Rt++++k+ w+++l
  GSBRNA2T00026379001  70 RGNFTKEEEDTIIHLHQTLGNK-WAKIASHLG--RTDNEIKNVWNTHL 114
                          89********************.********8..***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0541264IPR017930Myb domain
SuperFamilySSF466891.8E-2516110IPR009057Homeodomain-like
SMARTSM007173.5E-111666IPR001005SANT/Myb domain
PfamPF002491.1E-131764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-211871IPR009057Homeodomain-like
CDDcd001671.72E-81964No hitNo description
PROSITE profilePS5129423.4865118IPR017930Myb domain
SMARTSM007174.3E-1469116IPR001005SANT/Myb domain
PfamPF002491.7E-1470114IPR001005SANT/Myb domain
CDDcd001672.39E-872114No hitNo description
Gene3DG3DSA:1.10.10.605.7E-2572119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGKGKAPCCD HSQILKRGPW SDEESEILKA FILKNGHRNW RSIPKLAGLM RCGKSCRLRW  60
VNYLRPGLKR GNFTKEEEDT IIHLHQTLGN KWAKIASHLG RTDNEIKNVW NTHLKKRLIK  120
RNSSASSDVT NQAPSVSRSS SSSSSSVSNN VIKSEKLNQE EELEQILVED MASGFEVNAP  180
QSLESLFEDR KVPPPITKPD SLEIRGKSDD ELCRQMVEPG LDDYNEWLNY FDNQTF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21151185108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cauline leaves and siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in metal ions homeostasis, including iron ions (Fe) acquisition, via the regulation of NAS4 and NAS2 genes expression. Necessary for plant survival in alkaline soil where iron availability is greatly restricted. Triggers tolerance to nickel (Ni) and zinc (Zn) ions. {ECO:0000269|PubMed:24278034}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00352DAPTransfer from AT3G12820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00026379001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates strongly in the root stele and in the outer layers of the lateral roots when exposed to iron (Fe)-deficient conditions (PubMed:24278034). Slightly induced by ethylene and by darkness conditions (PubMed:9839469). Accumulates upon potassium (K) depletion (PubMed:15489280). Induced by zinc (Zn) and cadmium (Cd) ions (PubMed:18088336). {ECO:0000269|PubMed:15489280, ECO:0000269|PubMed:18088336, ECO:0000269|PubMed:24278034, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013670431.21e-176transcription factor MYB58-like
SwissprotQ9LTV41e-115MYB10_ARATH; Transcription factor MYB10
TrEMBLA0A078GHY61e-174A0A078GHY6_BRANA; BnaC01g38230D protein
STRINGBo1g138940.11e-174(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140961624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12820.11e-115myb domain protein 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]