PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00026537001

Common Name

GSBRNA2T00026537001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 283aa MW: 32281 Da PI: 9.4129

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00026537001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	40.3	6.7e-13	211	240	32	61
zf-Dof 32 fCkaCrryWtkGGalrnvPvGggrrknkks 61 Ck+C+ryWt+GG +r v vG+gr knk+ GSBRNA2T00026537001 211 VCKKCQRYWTAGGKMRYVLVGAGRHKNKNL 240 6**************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47661	2.75E-5	62	167	IPR010989	t-SNARE
Pfam	PF14523	5.4E-7	69	162	No hit	No description
Pfam	PF02701	9.0E-9	211	239	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-6	212	238	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016192	Biological Process	vesicle-mediated transport
GO:0016020	Cellular Component	membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MWAYICCRDL CPAYYNQADE EEIHVFRNAS FKSLGLCRLL QYEIYSQTMV SRAVFHILLN 60 TPKNFQLQIH LINVLLKSIT HLRSTFNASF TQARRWNCDY KKEKEKVTDI RTGAAKLKED 120 SEADFHGAAT NIVNAKLAKD FQSVLKEFQK AQRLAAEREI RYTHVVTKDI PTRVVIEWYL 180 LSRGEAKGTG ENYALPAIQQ YGDQALLLQL VCKKCQRYWT AGGKMRYVLV GAGRHKNKNL 240 ASHNNCNVSI TSAETDLQHP YGTNLLHILA LIQSSANQWH QG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00026537001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC237334	6e-44	AC237334.1 Arabidopsis lyrata clone JGIFAFI-61P18, complete sequence.
GenBank	AF411797	6e-44	AF411797.1 Arabidopsis thaliana AT5g16830/F5E19_170 mRNA, complete cds.
GenBank	AL391147	6e-44	AL391147.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F5E19 (ESSA project).
GenBank	ATHSYNTAXH	6e-44	L41651.1 Arabidopsis thaliana syntaxin of plants 21 (SYP21) mRNA, complete cds.
GenBank	AY088599	6e-44	AY088599.1 Arabidopsis thaliana clone 8257 mRNA, complete sequence.
GenBank	BT025036	6e-44	BT025036.1 Arabidopsis thaliana At5g16830 mRNA, complete cds.
GenBank	CP002688	6e-44	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A078GG67	0.0	A0A078GG67_BRANA; BnaA07g02590D protein
TrEMBL	A0A3P6AP93	0.0	A0A3P6AP93_BRACM; Uncharacterized protein
TrEMBL	M4CCX6	0.0	M4CCX6_BRARP; Uncharacterized protein
STRING	Bra002057.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-20	cycling DOF factor 2

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]