PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00026595001
Common NameGSBRNA2T00026595001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 232aa    MW: 26497.7 Da    PI: 10.369
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00026595001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1279.5e-09147170427
                          XCHHHCHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkae 27 
                          ++r +r++kNRe+A rsR+RK++ 
  GSBRNA2T00026595001 147 DRRHKRMIKNRESAARSRARKQEC 170
                          799*******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.6E-11139211No hitNo description
SMARTSM003381.3E-5144215IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.646146209IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.9E-6148204No hitNo description
CDDcd147071.12E-20148216No hitNo description
PROSITE patternPS000360151166IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MLSSAKHKIN HSAFSVSSSS SSLPHSYSQA KNMTQVTMEE VWKDINLASL HQHRQLNIDH  60
EPMLSNQNPN NSIFKDFLNK PLNQEPQPLP PSSSSSTLHR SLLPPPPPET VLSLNPHSIN  120
THFDESARFG CFGKKRGGQE SDESRGDRRH KRMIKNRESA ARSRARKQEC LSPYFSPPYQ  180
LHAYTNELEL AISHLQKENA RLKRQEEQLK MAEATQHQTK RKLQRSWTTP F*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed on the flanks of the shoot apex. {ECO:0000269|PubMed:23543784}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00026595001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ1771482e-43GQ177148.1 Arabidopsis thaliana ecotype Ll-0 FDP gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018510840.11e-131PREDICTED: bZIP transcription factor 27 isoform X2
SwissprotQ7PCC63e-81FDP_ARATH; bZIP transcription factor 27
TrEMBLA0A078GCZ81e-169A0A078GCZ8_BRANA; BnaA07g03000D protein
STRINGBra002090.1-P1e-130(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19342772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.21e-65basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Jang S,Li HY,Kuo ML
    Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets.
    Sci Rep, 2017. 7: p. 44477
    [PMID:28290557]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]