PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00026989001
Common NameGSBRNA2T00026989001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 284aa    MW: 32621.9 Da    PI: 8.4035
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00026989001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.75.3e-221762449
                         -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +n+ n qvtfskRr+g++KKA+EL++LC+ae+ vi+fs+  k++ +
  GSBRNA2T00026989001 17 KNENNLQVTFSKRRTGLFKKASELCTLCGAEIVVIVFSPGKKVFSF 62
                         8999***********************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-32665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.829666IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-27786IPR002100Transcription factor, MADS-box
CDDcd002654.09E-33778No hitNo description
PRINTSPR004041.0E-17828IPR002100Transcription factor, MADS-box
PfamPF003198.4E-241662IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-172843IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-174364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MVRKSKGRQK IEMVKMKNEN NLQVTFSKRR TGLFKKASEL CTLCGAEIVV IVFSPGKKVF  60
SFGHPNVDCV IDRFANINPP NPRQHTDMQL SEARRNAIVR DLNNHLTQVT EEFEIEKKRT  120
EDLKQKRKNS NMPENWWEEP IEDLNLSQLT EFKCGLEKLR KTVTTEASKN FQAIVPRHNF  180
YGGSSNNSTF GICDDHAGNI DTDLDLYNHQ RMVARNTFAC NLNNMMVPYH ITTPFGNIGN  240
SNIIEGFTPE YNQNPNKLCF KQEHMSECDH HSAHPPRFGH GYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-16795291MEF2 CHIMERA
6byy_B9e-16795291MEF2 CHIMERA
6byy_C9e-16795291MEF2 CHIMERA
6byy_D9e-16795291MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}.
UniprotTISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00026989001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639809.10.0PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK21e-108AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A078GJ530.0A0A078GJ53_BRANA; BnaC05g33070D protein
STRINGBo5g113750.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-110AGAMOUS-like 62
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  3. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  4. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  5. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  6. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]