PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00027078001
Common NameGSBRNA2T00027078001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 438aa    MW: 46333.7 Da    PI: 8.16
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00027078001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-123964227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         +++ C +++rtG C yG+rC+F+H++
  GSBRNA2T00027078001 39 DEPDCIYYLRTGACGYGSRCRFNHPR 64
                         6899********************96 PP
2zf-CCCH38.52e-1288113227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++ C++f+rtGtCk+G++Ck++H++
  GSBRNA2T00027078001  88 GQPVCQHFMRTGTCKFGATCKYHHPR 113
                          5789********************96 PP
3zf-CCCH37.63.7e-12134158226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++++rtG+Ck+G +C+F+H+
  GSBRNA2T00027078001 134 GEKECSYYLRTGQCKFGLTCRFNHP 158
                          7899********************9 PP
4zf-CCCH406.6e-13283307226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++f+rtG Ck+G++C+++H+
  GSBRNA2T00027078001 283 DQPECQYFMRTGDCKFGSSCRYHHP 307
                          689*********************9 PP
5zf-CCCH32.71.3e-10329354227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          + + C +fa+ G+Ck+G+ CkF H++
  GSBRNA2T00027078001 329 GVAQCTHFAQHGICKFGPACKFDHSM 354
                          6788********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4463765IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-53764IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-103964IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-64165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-54364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.9286114IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-686113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-687113IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-1088113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-591113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54132160IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5132159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6134162IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9134158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4138157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.155281309IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6281308IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10283307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6284310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-5287307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723327355IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4327354IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-8329353IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5330355IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4333354IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MERYGRSGEE GSRSDPSGQT GVQASVWRGG GESYPERPDE PDCIYYLRTG ACGYGSRCRF  60
NHPRDRGAVV GGVRGGGGGD GALPERMGQP VCQHFMRTGT CKFGATCKYH HPRQGGGSVA  120
PVSLSYLGYP LRPGEKECSY YLRTGQCKFG LTCRFNHPVP QQQQQPQPQP QLHTIYPTLQ  180
SQPSQQYGLV LARPSLLPGS YLPSHYGPPM VLPPGMVTYP GWNPYQPSLT AMPSPGTQPS  240
IGPSSVYGMA PLSPSGTAYT GTYQSGGPSL TTSKEESFPQ RPDQPECQYF MRTGDCKFGS  300
SCRYHHPLDA VQPKTSVLFS SIGLPLRPGV AQCTHFAQHG ICKFGPACKF DHSMSSSLSY  360
SPSASSLTDM PVAPYPIGSS SLSGASAPVS LSNEPTTEAV TAVSSPMVSG QEPAETGGDS  420
ASVSGSIEAK TSSSSSK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.66550.0flower| microspore-derived embryo| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00027078001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013714338.10.0zinc finger CCCH domain-containing protein 34-like
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLA0A078GHB50.0A0A078GHB5_BRANA; BnaA05g30930D protein
STRINGBra020750.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]