PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00027129001

Common Name

GSBRNA2T00027129001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 607aa MW: 67378.1 Da PI: 6.3519

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00027129001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.6	0.0005	443	480	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq GSBRNA2T00027129001 443 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 480 67799************55......5566667777777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	4.5E-30	6	153	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	8.07E-4	424	481	No hit	No description
PROSITE profile	PS50888	11.28	430	479	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-5	443	486	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-4	443	498	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence Send to blast
MGSTSQEILR SLCSNTDWKY AVFWKLNHRS RMVLTLEDAY YDNHRHNDSL KNMHGAHDPL 60 GLALAKMAYH VYSLGEGIIG HVAVSGEHQW LFPEYYDNYH SVSEFHNVWE SQISAGIKTV 120 LVVAVGPCGV VQLGSLRKID EDVTLVNHIK HMFLALKDPL ADHAANLMQY NMNNSLCLPK 180 LPSECLHVEA FSNCSGEVGK AMEVEESSFL TQYPSLHPYL KNHALNNTSS SALAIEAERL 240 ITDQSYPGLD SSTFHNLSEP MPERRCESSR FDALISSGYT FPGSELLEAL GSGFKQTSRE 300 LVKSEHGSAT RPTDDNMSHS QLTFDSAPEN LLDAVVANVC HSDGNARDDI FSSRSVQSFL 360 TSMEMAEPSG QNNHIMMNQL PPAAEVDTQQ NTSDICGAFS SIGFSSTCPS SSSDHFQTSL 420 EMPKKNKKRA KPGESSRPRP RDRQLIQDRI KELRELVPNG SKCSIDSLLE RTIKHMLFLQ 480 NVTKHADKLS KSANTKMQQK ETGAQGSTCA VEVGGHLQVC SIIVENLNKH GMVLIEMLCE 540 ECSHFLEISN VIRSLDLTIL RGVTEAQGDK TWICFVVESQ SNKVMQRMDI LWSLVQIFQP 600 KANGKP*

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence Send to blast

MGSTSQEILR SLCSNTDWKY AVFWKLNHRS RMVLTLEDAY YDNHRHNDSL KNMHGAHDPL  60
GLALAKMAYH VYSLGEGIIG HVAVSGEHQW LFPEYYDNYH SVSEFHNVWE SQISAGIKTV  120
LVVAVGPCGV VQLGSLRKID EDVTLVNHIK HMFLALKDPL ADHAANLMQY NMNNSLCLPK  180
LPSECLHVEA FSNCSGEVGK AMEVEESSFL TQYPSLHPYL KNHALNNTSS SALAIEAERL  240
ITDQSYPGLD SSTFHNLSEP MPERRCESSR FDALISSGYT FPGSELLEAL GSGFKQTSRE  300
LVKSEHGSAT RPTDDNMSHS QLTFDSAPEN LLDAVVANVC HSDGNARDDI FSSRSVQSFL  360
TSMEMAEPSG QNNHIMMNQL PPAAEVDTQQ NTSDICGAFS SIGFSSTCPS SSSDHFQTSL  420
EMPKKNKKRA KPGESSRPRP RDRQLIQDRI KELRELVPNG SKCSIDSLLE RTIKHMLFLQ  480
NVTKHADKLS KSANTKMQQK ETGAQGSTCA VEVGGHLQVC SIIVENLNKH GMVLIEMLCE  540
ECSHFLEISN VIRSLDLTIL RGVTEAQGDK TWICFVVESQ SNKVMQRMDI LWSLVQIFQP  600
KANGKP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00027129001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352985	0.0	AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013637009.1	0.0	PREDICTED: transcription factor bHLH155-like
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	A0A078GJG0	0.0	A0A078GJG0_BRANA; BnaC04g13380D protein
STRING	Bo4g052580.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2083	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.2	0.0	conserved peptide upstream open reading frame 7

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]