PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00027161001

Common Name

GSBRNA2T00027161001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 437aa MW: 49066.8 Da PI: 4.8845

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00027161001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.6e-12	235	276	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR + N++f+ L++l+P++ +K++ a+i+ +A++YIk+L GSBRNA2T00027161001 235 TERERRVHFNDRFSDLKSLIPNP-----TKNDRASIVGEAIDYIKEL 276 59*******************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.596	227	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-13	229	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-8	233	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-9	235	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.2E-12	235	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.81E-11	236	281	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MENLNTDFVT NAEERESLYE EMACFDSAEV TAESGAGPPP QTLVAGSTSN SNCSVDVEEL 60 PEFHLSPQDC PQPSSTPLQF HINTLPPPPP PPPCDNQYQN NNINLIHQMS HDQQQHANWD 120 NNGYQDFVNL GPNSSTTPDL LSLLHLPRCS LPQSMLPNSF SDFMSSSSAA AVMYDPLFHL 180 NFPLQTRDQQ RNNSCFLGVE DQIQMDGFDN GVIEFSSGGN NRKGRGSGKS RTFPTERERR 240 VHFNDRFSDL KSLIPNPTKN DRASIVGEAI DYIKELLRTI EDLKMLVEKK NFGRFRSKKR 300 ARVGGEEEEQ EGDNVVYRPK SEVEQSCFNN NKALRCSWLR RKSKVTEVDV RIIDDEVTIK 360 VVQKKKINCL LFTTRVLDQL QLDLQHVAGG QIGEHYSFLF NTKICEGSCV YASGIADTVM 420 EVVEKQYMEA VPANGY*

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MENLNTDFVT NAEERESLYE EMACFDSAEV TAESGAGPPP QTLVAGSTSN SNCSVDVEEL  60
PEFHLSPQDC PQPSSTPLQF HINTLPPPPP PPPCDNQYQN NNINLIHQMS HDQQQHANWD  120
NNGYQDFVNL GPNSSTTPDL LSLLHLPRCS LPQSMLPNSF SDFMSSSSAA AVMYDPLFHL  180
NFPLQTRDQQ RNNSCFLGVE DQIQMDGFDN GVIEFSSGGN NRKGRGSGKS RTFPTERERR  240
VHFNDRFSDL KSLIPNPTKN DRASIVGEAI DYIKELLRTI EDLKMLVEKK NFGRFRSKKR  300
ARVGGEEEEQ EGDNVVYRPK SEVEQSCFNN NKALRCSWLR RKSKVTEVDV RIIDDEVTIK  360
VVQKKKINCL LFTTRVLDQL QLDLQHVAGG QIGEHYSFLF NTKICEGSCV YASGIADTVM  420
EVVEKQYMEA VPANGY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00027161001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF251695	0.0	AF251695.1 Arabidopsis thaliana putative transcription factor BHLH10 mRNA, complete cds.
GenBank	AK228592	0.0	AK228592.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH10, complete cds, clone: RAFL15-38-K03.
GenBank	BT005711	0.0	BT005711.1 Arabidopsis thaliana clone RAFL15-38-K03 (R50165) putative bHLH protein (At2g31220) mRNA, complete cds.
GenBank	BT008608	0.0	BT008608.1 Arabidopsis thaliana clone U50165 putative bHLH protein (At2g31220) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633827.1	0.0	PREDICTED: transcription factor bHLH10-like isoform X1
Swissprot	Q84TK1	0.0	BH010_ARATH; Transcription factor bHLH10
TrEMBL	A0A078GHV3	0.0	A0A078GHV3_BRANA; BnaC04g13520D protein
STRING	Bo4g052460.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31220.1	1e-173	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]