PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00027229001
Common NameGSBRNA2T00027229001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 214aa    MW: 23468.6 Da    PI: 7.9074
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00027229001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.74.2e-2078112135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C+nC +t+TplWR+gp+g+k+LCnaCG++++k+++
  GSBRNA2T00027229001  78 CANCDATSTPLWRNGPRGPKSLCNACGIRFKKEER 112
                          ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-1672124IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.04E-1374112No hitNo description
PROSITE profilePS5011413.63976108IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.2E-1776112IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.23E-1377109No hitNo description
PfamPF003201.2E-1778112IPR000679Zinc finger, GATA-type
PROSITE patternPS00344078103IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGFSMFFSSE NDVVHHSTPY ASVDCTLSLG TPSTRLCNDD DRRFSSHTSN RLGWDFLHGA  60
KKGIGGGGDN SYLLPRRCAN CDATSTPLWR NGPRGPKSLC NACGIRFKKE ERRASTAGIS  120
TSGGGSTAAG VSTSDHHGGA NYYYNNNHYA SPTPWIHHQQ HNTQRVPYYS PANNQYSFVD  180
DAREVNHDAT ADSFLSWRLN VADRTSLVHD FTM*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout the inflorescence meristem (IM) and early stages of floral primordia. In developping flowers, restricted to the innert hree whorls, speci fi cally in the petals, stamens, and carpels. Within the stamens, mostly detected in the anther locules as well as in the vascular strands. In carpels, mainly present in ovules. {ECO:0000269|PubMed:23335616}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00027229001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895490.0AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109327.11e-156PREDICTED: GATA transcription factor 19-like
SwissprotQ6QPM21e-101GAT19_ARATH; GATA transcription factor 19
TrEMBLA0A078GHJ41e-158A0A078GHJ4_BRANA; BnaA08g15310D protein
TrEMBLA0A3P6BSI51e-158A0A3P6BSI5_BRACM; Uncharacterized protein
STRINGBra010563.1-P1e-155(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.16e-86GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]