PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00027352001

Common Name

GSBRNA2T00027352001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 120aa MW: 13961.8 Da PI: 10.1773

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00027352001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.4	6.5e-07	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+ +F+++ + H+++H GSBRNA2T00027352001 56 YTCPKCNSVFNTSQKFAAHMSSH 78 9********************99 PP
2	HLH	12	0.0004	82	106	3	27
HHHHHHHHHHHHHHHHHHHHHHCTS CS HLH 3 rahnerErrRRdriNsafeeLrell 27 ++++er+ r+R+ri++++++L + + GSBRNA2T00027352001 82 ETKKERDERYRARIKNKYHKLSSNI 106 6899*****************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.65E-5	54	82	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-4	55	81	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.034	56	83	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.002	56	78	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	58	78	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MWNRPTSYRP TFLDKNCGIL NPKPVNAIPR QDSPYRQHLD MFSSSSNLPY EKYGPYTCPK 60 CNSVFNTSQK FAAHMSSHYK DETKKERDER YRARIKNKYH KLSSNIHGGS KKIKLEAME*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00027352001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597141.1	3e-74	PREDICTED: uncharacterized protein LOC106305307
Refseq	XP_013679993.1	2e-74	uncharacterized protein LOC106384600
TrEMBL	A0A078J1S2	1e-84	A0A078J1S2_BRANA; BnaCnng35190D protein
STRING	Bo7g010030.1	3e-83	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1924	19	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18490.1	4e-40	C2H2-like zinc finger protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]