PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00027354001
Common NameGSBRNA2T00027354001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 102aa    MW: 11970.5 Da    PI: 10.3093
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00027354001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.85e-075678123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+Cp+C+ +F+++  +  H+++H
  GSBRNA2T00027354001 56 YTCPKCNSVFNTSKKFAAHMSSH 78
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-54686No hitNo description
Gene3DG3DSA:3.30.160.602.6E-45580IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00195678IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.665683IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MWNRPTSYRP TFLDKNCGIL NPKPVNAIPR QDSPYRQHLD MFSSSSNFPY EKYGPYTCPK  60
CNSVFNTSKK FAAHMSSHYK NETKKERDER YRARIKKNIT N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00027354001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594354.15e-57PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC106302379
TrEMBLA0A078J5K51e-69A0A078J5K5_BRANA; BnaCnng35210D protein
STRINGBo7g010030.13e-67(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18490.11e-32C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]