PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00027470001
Common NameGSBRNA2T00027470001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 245aa    MW: 26948.7 Da    PI: 5.9281
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00027470001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof115.72e-362280562
               zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg.grrknkkss 62
                         +l+cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGg g+rk+++ +
  GSBRNA2T00027470001 22 TLSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGgGCRKSRRPK 80
                         689********************************************85279*999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027019.9E-312377IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.6612377IPR003851Zinc finger, Dof-type
ProDomPD0074786.0E-242578IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102561IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MERTEALTSS FIWRPNANAE ITLSCPRCGS SNTKFCYYNN YSLTQPRYFC KGCRRYWTKG  60
GSLRNVPVGG GGCRKSRRPK SSSGNTKTGL TANSYNSGGG APNIDLALVY ANFLNPKPDE  120
HKLQENCDTD FLVDEPAGAS MEPLWSMDID HGHHHHHYEH QVERIVEECG YNGLPPFPGE  180
ELMSIDTSGV WSDALLNGHN HVDVGGVTPA QIVQDPVVHF ADESSDSTNL LFGSWSRFDF  240
SVDG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.109581e-113microspore-derived embryo
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00027470001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013660058.11e-172dof zinc finger protein DOF3.5-like
SwissprotQ9SVC51e-145DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBLA0A078J2040.0A0A078J204_BRANA; BnaCnng35310D protein
STRINGBo8g080660.11e-169(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91412238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.11e-141Dof family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]