PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00027636001
Common NameGSBRNA2T00027636001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 257aa    MW: 29683.9 Da    PI: 8.106
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00027636001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.15.4e-30177232156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r++WtpeLH+ Fv+a++qLGG+ +A+Pk+i+e+m+ ++Lt+++vkSHLQkYRl+
  GSBRNA2T00027636001 177 KQRRCWTPELHRLFVDALQQLGGPGVAIPKQIREHMQEESLTNDEVKSHLQKYRLH 232
                          79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.58174234IPR017930Myb domain
SuperFamilySSF466891.43E-17175235IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-26176235IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-25177232IPR006447Myb domain, plants
PfamPF002491.4E-7179230IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGSLGDELSL GQRRHTSKIM NVAVEKGCKL EEHVKKLEEE KRKIQGSELE LPLCLQILND  60
AISYLKKETE TDTQPLLKDF ISLSKPIREE HDEEGEELFK EKKFQLWREN DHISNARFSD  120
TKIKNTLEIE RDEEKSSNSL YMLLSPGMTT PKGRRKLVAS SFVPQPPPYL QQQALRKQRR  180
CWTPELHRLF VDALQQLGGP GVAIPKQIRE HMQEESLTND EVKSHLQKYR LHIRKSDSNL  240
EKQSVVVLGF NLWNSS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00027636001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216313e-70AK221631.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-96-G04.
GenBankAY0866943e-70AY086694.1 Arabidopsis thaliana clone 2686 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584006.11e-174PREDICTED: two-component response regulator ARR2
SwissprotQ9FX843e-99HHO6_ARATH; Transcription factor HHO6
TrEMBLA0A078J5W20.0A0A078J5W2_BRANA; BnaC05g51600D protein
STRINGBo5g076300.11e-174(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139271824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.11e-78G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]