PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00027738001
Common NameGSBRNA2T00027738001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 379aa    MW: 43443.6 Da    PI: 6.1899
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00027738001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.58.9e-06647337
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                          ++C++++  ++  +C++    +C +C  + H++       H
  GSBRNA2T00027738001  6 SPMCDHCNMGKAVVYCKTHLARICSQCDRKLHHYvtmdspdH 47
                         579*****977********************96655555555 PP
2CCT54.73.6e-19314357144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R +a++RY eK+k+RkF KkirYesRK  A++++R+KGrF+k++
  GSBRNA2T00027738001 314 RLEAKKRYLEKKKKRKFGKKIRYESRKSSADTKKRLKGRFTKAD 357
                          7899*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.3452IPR000315B-box-type zinc finger
CDDcd000211.22E-4752No hitNo description
PfamPF062031.0E-14314356IPR010402CCT domain
PROSITE profilePS5101713.652314356IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MHIMSSPMCD HCNMGKAVVY CKTHLARICS QCDRKLHHYV TMDSPDHSRL LLCEKCVSQA  60
ADVQCLEQGL CLCQTCVPNA TVTSRFPFCN VSNNHSGYSF PRDLDLDSFS SSLSSSLTDL  120
SWGYHFVPLS PKNGDSSSSS SVIFQNFDNH TKNNSDQRVQ MLQPDYMDNS KDFSYSGLEG  180
YETKDIENVW LNNFDDNKAV LLDQKEYLYR EELILTDQLI DAIMKHNDET TTEVIHTDYN  240
IEALGNASCE DSNTNQMIQS KAKEETNNNV GILFPNAHIH DECRPSQLIL TDVDEMLPWD  300
DQLLESPIYT PQYRLEAKKR YLEKKKKRKF GKKIRYESRK SSADTKKRLK GRFTKADAEY  360
DYDPRANNTT KEVYKTKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323328KKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00027738001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716396.10.0putative zinc finger protein CONSTANS-LIKE 11 isoform X1
TrEMBLA0A078J6160.0A0A078J616_BRANA; BnaAnng16270D protein
STRINGBra032471.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1355245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-14B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]