PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00027751001
Common NameGSBRNA2T00027751001, LOC106430127, NAC69-1.1
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 426aa    MW: 48070.1 Da    PI: 7.709
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00027751001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM125.25.2e-3961363128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkd 89 
                          +G+rF+Pt ee++++yLk+k+ +k+  ++e+i+e++i+ ++P+ Lp+  k+++++  wyfF++r+ ++++ +k ++r+t sg+Wkatgkd
  GSBRNA2T00027751001   6 VGYRFSPTGEEVINYYLKNKILDKPWLVNEAINEINICAHDPKFLPAlsKLESKDLVWYFFTPREYHASEkKKGTKRTTPSGFWKATGKD 95 
                          7************************999899***************5347777888********9988762667888************* PP

                  NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + + +k  +g ++g+kktLv+++g+a +g+ t Wvmhey+ 
  GSBRNA2T00027751001  96 RIIRDKrgHGVEIGIKKTLVYHHGKAANGVGTPWVMHEYHT 136
                          ****99777788***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.3724154IPR003441NAC domain
SuperFamilySSF1019417.32E-435154IPR003441NAC domain
PfamPF023652.0E-236135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MERNLVGYRF SPTGEEVINY YLKNKILDKP WLVNEAINEI NICAHDPKFL PALSKLESKD  60
LVWYFFTPRE YHASEKKKGT KRTTPSGFWK ATGKDRIIRD KRGHGVEIGI KKTLVYHHGK  120
AANGVGTPWV MHEYHTTSLP LNQRNYVICQ VMYKGADGDS LYGNNSNALS HSMVSDLNTV  180
REINTAPQVE QPRQDLYLSV DDLANPLNEQ DDPSLFNPDT LFNDSYWEDE YINDLLGFNG  240
GNYDDVLRAP DITMQEDRND HRPKKALTGI IVDCSSDSDA ESISATSYQE TSSPDSFHSL  300
SAQFHTSGDE IPSLRKDSCT DINPHAETSI NRKTRKAHLT RRTVPSKQEV NEGKSKAVNA  360
SVDKKKSSSS MVKTEKKGWF ITEEAMDRRN RKKPRYIYLM NMIIGLILLV AVIGNITSVS  420
LSVKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-20715420165NO APICAL MERISTEM PROTEIN
1ut4_B4e-20715420165NO APICAL MERISTEM PROTEIN
1ut7_A4e-20715420165NO APICAL MERISTEM PROTEIN
1ut7_B4e-20715420165NO APICAL MERISTEM PROTEIN
3swm_A5e-20715423168NAC domain-containing protein 19
3swm_B5e-20715423168NAC domain-containing protein 19
3swm_C5e-20715423168NAC domain-containing protein 19
3swm_D5e-20715423168NAC domain-containing protein 19
3swp_A5e-20715423168NAC domain-containing protein 19
3swp_B5e-20715423168NAC domain-containing protein 19
3swp_C5e-20715423168NAC domain-containing protein 19
3swp_D5e-20715423168NAC domain-containing protein 19
4dul_A4e-20715420165NAC domain-containing protein 19
4dul_B4e-20715420165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388394RNRKKPR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00027751001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4204390.0KJ420439.1 Brassica napus NAC transcription factor 69-1 (NAC69-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001303037.10.0NAC domain-containing protein 69-like
SwissprotQ9M1261e-159NAC69_ARATH; NAC domain-containing protein 69
TrEMBLA0A078J8600.0A0A078J860_BRANA; BnaA09g51620D protein
STRINGBra036327.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.11e-140NAC domain containing protein 69
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  3. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]