PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00027817001
Common NameGSBRNA2T00027817001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 586aa    MW: 63485.1 Da    PI: 4.6104
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00027817001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS368.21.1e-1122145853374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +++++c   ++s++ e a ++L r+++ +s++gdp++R+  +fteAL +rl+   +++++  + s+++   +++ + ++k++++++P++k
  GSBRNA2T00027817001 214 RAIYDCSLILDSSESEDAAKALVRIKKSVSEHGDPTERVGYHFTEALCNRLSP--DSVSNDSSQSQAA-AIVENLILSYKTLNDACPYFK 300
                          67899999********************************************9..6666555444444.4599999************** PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelgvpfef 178
                          f+hltaNqaIlea+e+++++Hi+Df+i qG+QWpaLlqaLa+R++g+p ++Ri g+ +p+s     + +l +tg+rL++fA+ l+++f+f
  GSBRNA2T00027817001 301 FAHLTANQAILEATEHSSKIHIVDFGIVQGIQWPALLQALATRSSGKPaQVRISGIPAPSSLgqsPEPSLIATGNRLRDFAKVLDLNFDF 390
                          ********************************************77666*********9998998999********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                           + v + ++ l+ +++rv+p+EalaVn++lql++llde+ ++ +   + L+l +sl+P vv++ e ++++n+  F++r+ +al++ysa+f
  GSBRNA2T00027817001 391 IP-VLTPIHLLNGSSFRVDPDEALAVNFMLQLYKLLDETPAVFD---TALRLARSLNPMVVTLGEYDVSLNRVGFANRVKNALHFYSAVF 476
                          **.799******************************99988887...******************************************* PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                          +sle +l+r+seer  vEr+++gr i+ ++  e +  +r r+e +e+Wr  +e+aGF++v+ls++a++qa+ ll +++ s  y++ e++ 
  GSBRNA2T00027817001 477 ESLEPSLGRDSEERLRVERVMFGRTISGLIGPEITGnQRLRMEGKEQWRVLMENAGFESVKLSNYAVSQAEILLWNYNySSLYSIVESKP 566
                          *******************************997764789**************************************9999*******9 PP

                 GRAS 357 slv.lgWkdrpLvsvSaWr 374
                           +v l W+d pL++vS+Wr
  GSBRNA2T00027817001 567 GFVsLAWNDLPLLTVSSWR 585
                          9999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.315186563IPR005202Transcription factor GRAS
PfamPF035143.9E-110214585IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQEQQPQ DHQIFGINPL SLNPWPTANT QSLGFGLSGS  60
GFPDPFQVNG GGDPGDSGFP FHSLEHHHPT AGGGGGGGGF RLSDFDGGTG GEFESDEWME  120
TLITGGDSVA AAEGPDCDTW QNNNDFVIYG RDPFAAYPSS QPSDLNQVVA TSTSLPSALW  180
APSSPLSAPP LPSLSPPHGG SGPHDFDLEP PLLRAIYDCS LILDSSESED AAKALVRIKK  240
SVSEHGDPTE RVGYHFTEAL CNRLSPDSVS NDSSQSQAAA IVENLILSYK TLNDACPYFK  300
FAHLTANQAI LEATEHSSKI HIVDFGIVQG IQWPALLQAL ATRSSGKPAQ VRISGIPAPS  360
SLGQSPEPSL IATGNRLRDF AKVLDLNFDF IPVLTPIHLL NGSSFRVDPD EALAVNFMLQ  420
LYKLLDETPA VFDTALRLAR SLNPMVVTLG EYDVSLNRVG FANRVKNALH FYSAVFESLE  480
PSLGRDSEER LRVERVMFGR TISGLIGPEI TGNQRLRMEG KEQWRVLMEN AGFESVKLSN  540
YAVSQAEILL WNYNYSSLYS IVESKPGFVS LAWNDLPLLT VSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1402115853375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.64750.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, sepals, filaments of stamen, and in the central cylinder of the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00027817001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013686261.10.0scarecrow-like protein 4
SwissprotQ9FL030.0SCL4_ARATH; Scarecrow-like protein 4
TrEMBLA0A078JXJ20.0A0A078JXJ2_BRANA; BnaCnng77180D protein
STRINGBo7g064520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]